View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11066_low_13 (Length: 209)

Name: NF11066_low_13
Description: NF11066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11066_low_13
NF11066_low_13
[»] chr1 (2 HSPs)
chr1 (18-194)||(19467947-19468123)
chr1 (60-124)||(52083104-52083168)
[»] chr7 (3 HSPs)
chr7 (22-194)||(10169578-10169750)
chr7 (22-194)||(10177103-10177275)
chr7 (63-126)||(10615113-10615176)
[»] chr3 (2 HSPs)
chr3 (39-190)||(51763892-51764043)
chr3 (87-187)||(13470184-13470287)
[»] chr5 (3 HSPs)
chr5 (10-161)||(12846066-12846217)
chr5 (87-190)||(28532264-28532367)
chr5 (60-161)||(32267998-32268099)
[»] chr4 (2 HSPs)
chr4 (91-188)||(21833832-21833929)
chr4 (60-161)||(3438125-3438226)
[»] chr6 (1 HSPs)
chr6 (87-190)||(6416510-6416616)


Alignment Details
Target: chr1 (Bit Score: 169; Significance: 8e-91; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 194
Target Start/End: Complemental strand, 19468123 - 19467947
Alignment:
Q  18 agacaacttatcaacatagtgatcatgcaaaaaaccagcacgttgaagatccaaatgttgcaaacctgcacacttggataacaaacaaaagattccagca 117  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19468123 agacaacttatcaacatagtgatcattcaaaaacccagcacgttgaagatccaaatgttgcaaacctgcacacttggataacaaacaaaagattccagca 19468024  T
Q  118 tagctatggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagagcatttc 194  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19468023 tagctatggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagagcatttc 19467947  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Original strand, 52083104 - 52083168
Alignment:
Q  60 ttgaagatccaaatgttgcaaacctgcacacttggataacaaacaaaagattccagcatagctat 124  Q
    |||||||||||||||||| |||  |  ||| || ||||||| |||||||||||||||||| ||||    
T  52083104 ttgaagatccaaatgttgtaaaaattgacattttgataacagacaaaagattccagcataactat 52083168  T

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Target: chr7 (Bit Score: 77; Significance: 6e-36; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 10169750 - 10169578
Alignment:
Q  22 aacttatcaacatagtgatcatgcaaaaaaccagcacgttgaagatccaaatgttgcaaacctgcacacttggataacaaacaaaagattccagcatagc 121  Q
    |||| ||||||||||||||||| ||  |||   ||| ||| ||||||||  ||||||||||||  |||||| ||| ||||||||||||||||||||||||    
T  10169750 aactcatcaacatagtgatcattcaggaaaatggcatgttcaagatccatgtgttgcaaacctcgacacttagatgacaaacaaaagattccagcatagc 10169651  T
Q  122 tatggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagagcatttc 194  Q
    | | | | ||||||||| ||||| ||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  10169650 tttagtccaagcaatatctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagtagagcatttc 10169578  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 22 - 194
Target Start/End: Complemental strand, 10177275 - 10177103
Alignment:
Q  22 aacttatcaacatagtgatcatgcaaaaaaccagcacgttgaagatccaaatgttgcaaacctgcacacttggataacaaacaaaagattccagcatagc 121  Q
    |||| ||||||||||||||||| ||  |||   ||| ||| ||||||||  ||||||||||||  |||||| ||| ||||||||||||||||||||||||    
T  10177275 aactcatcaacatagtgatcattcaggaaaatggcatgttcaagatccatgtgttgcaaacctcgacacttagatgacaaacaaaagattccagcatagc 10177176  T
Q  122 tatggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagagcatttc 194  Q
    | | | | ||||||||| ||||| ||||||||||||||||||| |||||||  ||||||||||||||||||||    
T  10177175 tttagtccaagcaatatctgagggcaagcctcgtcaaaggtagaccttccctcgcaatagagtagagcatttc 10177103  T

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Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 126
Target Start/End: Original strand, 10615113 - 10615176
Alignment:
Q  63 aagatccaaatgttgcaaacctgcacacttggataacaaacaaaagattccagcatagctatgg 126  Q
    ||||||||||||||| || |||  |||||||||||| |||||| ||||||||||||| ||||||    
T  10615113 aagatccaaatgttggaagccttgacacttggataataaacaatagattccagcataactatgg 10615176  T

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Target: chr3 (Bit Score: 45; Significance: 8e-17; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 39 - 190
Target Start/End: Complemental strand, 51764043 - 51763892
Alignment:
Q  39 atcatgcaaaaaaccagcacgttgaagatccaaatgttgcaaacctgcacacttggataacaaacaaaagattccagcatagctatggccaaagcaatat 138  Q
    ||||| || ||||||||||  ||||||||||||||||| ||||| |  ||| ||||||| |||||||| |||||||||||| |||| |||   |||| ||    
T  51764043 atcattcagaaaaccagcatcttgaagatccaaatgtttcaaacgttgacagttggataccaaacaaatgattccagcataactatagcccgtgcaa-at 51763945  T
Q  139 ttg-aggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagagca 190  Q
    ||| |||||||||||  ||||| | || ||||||| |||||| ||||||||||    
T  51763944 ttgaaggacaagccttttcaaaagaagaccttcccttgcaatcgagtagagca 51763892  T

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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 187
Target Start/End: Complemental strand, 13470287 - 13470184
Alignment:
Q  87 acacttggataacaaacaaaagattccagcatagctat---ggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagag 183  Q
    ||||||||||||||||| ||| ||||||||||| ||||   ||||||| |||| |  |||| ||| |||||||||||| || ||||||| ||||||| ||    
T  13470287 acacttggataacaaacgaaatattccagcataactatgggggccaaaacaatgtcggagggcaaacctcgtcaaaggaagaccttcccttgcaatacag 13470188  T
Q  184 taga 187  Q
    ||||    
T  13470187 taga 13470184  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 12846066 - 12846217
Alignment:
Q  10 agaagcagagacaacttatcaacatagtgatcatgcaaaaaaccagcacgttgaagatccaaatgttgcaaacctgcacacttggataacaaacaaaaga 109  Q
    ||||||| ||| |||||| ||||||  ||||||| ||||||  |||   |||||||||| |||||||| ||   |  ||||||||||||||| | |||||    
T  12846066 agaagcaaagataacttagcaacatgttgatcattcaaaaactcagtcagttgaagatctaaatgttgtaataattgacacttggataacaagcgaaaga 12846165  T
Q  110 ttccagcatagctatggccaaagcaatatttgaggacaagcctcgtcaaagg 161  Q
    |||||| ||| ||||  |||||||||| |||||| ||||| ||| |||||||    
T  12846166 ttccagtataactataaccaaagcaatctttgagaacaagactcctcaaagg 12846217  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 28532264 - 28532367
Alignment:
Q  87 acacttggataacaaacaaaagattccagcatagctatggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtag 186  Q
    ||||||||||||||||||||||| |||  |||| |||| |||  ||| || ||| ||||||||| |  ||||||| || ||| ||| |||||||| ||||    
T  28532264 acacttggataacaaacaaaagagtccgtcataactatagccccagcgattttttaggacaagctttatcaaaggaagacctccccttgcaatagtgtag 28532363  T
Q  187 agca 190  Q
    ||||    
T  28532364 agca 28532367  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 161
Target Start/End: Original strand, 32267998 - 32268099
Alignment:
Q  60 ttgaagatccaaatgttgcaaacctgcacacttggataacaaacaaaagattccagcatagctatggccaaagcaatatttgaggacaagcctcgtcaaa 159  Q
    |||||||||||| ||||| |||  |  |||||||||||  ||| ||| |||||||| |||||||| |||   ||||| || ||| |||||||||||||||    
T  32267998 ttgaagatccaagtgttggaaatgttgacacttggatagtaaagaaaggattccagaatagctatagccggtgcaatcttggagaacaagcctcgtcaaa 32268097  T
Q  160 gg 161  Q
    ||    
T  32268098 gg 32268099  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 91 - 188
Target Start/End: Complemental strand, 21833929 - 21833832
Alignment:
Q  91 ttggataacaaacaaaagattccagcatagctatggccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagagtagag 188  Q
    |||||||||||||||||||||||| |||| |||| |||   ||| | |   |||||||||||||| ||||| || ||||||| |||||||||||||||    
T  21833929 ttggataacaaacaaaagattccatcataactatagccggtgcattttcgaaggacaagcctcgttaaaggaagaccttcccttgcaatagagtagag 21833832  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 60 - 161
Target Start/End: Complemental strand, 3438226 - 3438125
Alignment:
Q  60 ttgaagatccaaatgttgcaaacctgcacacttggataacaaacaaaagattccagcatagctatggccaaagcaatatttgaggacaagcctcgtcaaa 159  Q
    |||||||||||||||||| | || |  |||||||||||||| | |||||||| ||||||| |||| |||   |||||  | ||||||||||||  |||||    
T  3438226 ttgaagatccaaatgttgtatacattgacacttggataacagagaaaagatttcagcataactatagccggtgcaattgtggaggacaagccttctcaaa 3438127  T
Q  160 gg 161  Q
    ||    
T  3438126 gg 3438125  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 190
Target Start/End: Original strand, 6416510 - 6416616
Alignment:
Q  87 acacttggataacaaacaaaagattccagcatagctatgg---ccaaagcaatatttgaggacaagcctcgtcaaaggtagcccttcccgtgcaatagag 183  Q
    ||||||||||||||||| ||| ||||||||| | ||||||   ||||| |||| |  ||||  || |||||||||||| || ||||||| ||||||| ||    
T  6416510 acacttggataacaaacgaaatattccagcagaactatgggggccaaaacaatgtcggagggtaaacctcgtcaaaggaagaccttcccttgcaatacag 6416609  T
Q  184 tagagca 190  Q
    |||||||    
T  6416610 tagagca 6416616  T

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