View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11066_low_2 (Length: 757)
Name: NF11066_low_2
Description: NF11066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11066_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 693; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 693; E-Value: 0
Query Start/End: Original strand, 1 - 745
Target Start/End: Complemental strand, 38246945 - 38246201
Alignment:
| Q |
1 |
ctcttgtggcgtgtgtctgggctgtttcgtttccccactcgagcacaacgtagtagtagaggtgtgtcttgtccaaccgaatgtgtaatttgtggaaata |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
38246945 |
ctcttgtggcgtgtgtctgggctgtttcgtttccccactcgagcacaacgtagtagtagaggtgtgtcttgtccaaccgaatgtgtaatttgtagaaata |
38246846 |
T |
|
| Q |
101 |
attacgaggacatcattcatgttttattcgaatgctcgagtgctgtgcaagtttggcatgccgtgaatttatgggataagattgatcgtgtgcttcgtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38246845 |
attacgaggacatcattcatgttttattggaatgcttgagtgctgtgcaagtttggcatgccgtgaatttatgggataagattgatcgtgtgcttcgtca |
38246746 |
T |
|
| Q |
201 |
ggattataatatgaattatgttatttttactttgtagcaacagcttgctccaatacagagtgaacattttgcagcaatactatggagcctatgggagcac |
300 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |
|
|
| T |
38246745 |
ggattataatatgaattctgttatttttactttgtagcaacaacttactccaatacagagtgaaaattttgcagcaatactatggagcctatgggaacac |
38246646 |
T |
|
| Q |
301 |
agaaacctgaaactttggcaacaaactaacgagactaatgtgcaggttatagagcgtgcaaagtagttgatggatgaatggagacatgcacaagtcattc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38246645 |
agaaacctgaaactttggcaacaaactaacgagactaatgtgcaggttatagagcgtgcaaagtagttgatggatgaatggagacatgcacaagtcattc |
38246546 |
T |
|
| Q |
401 |
gtttaggtagtgtaactccctctagttctgatccacatgggccgactcttatagcttggtaacaatgggtaaaaccagcccctagaaggtataaataaaa |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
38246545 |
gtttaggtagtgtaactccctctagttctgatccacatgggccgactcttatagcttggtaacaatgggtaaaaccggcccctagaaggtataaatgaaa |
38246446 |
T |
|
| Q |
501 |
aatagatgcctcgttctcctcgtcgcttaataaggtaggactcggaatgtcttagaggcgaagagggtaattttatgcttgcaaaaagtacttggttctc |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
38246445 |
aatagatgcctcgttctcctcgtcgcttaataaggtaggacttggaatgtcttagaggcgaagagggtaattttatgcttgcaaaaagtacctggttctc |
38246346 |
T |
|
| Q |
601 |
cccgctttgtgacgtcaatgcgggtgaagcaatgagtttatgtacgacacttgattgggtggcaaaccttcagtttgataatgtagactttgggttagat |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
38246345 |
cccgctttgtgacgtcaatgcgggtgaagcaatgagtttatgtacgacacttgattgggtggcaaaccttcagtttgataatgtagactttgtgttagat |
38246246 |
T |
|
| Q |
701 |
tctaagaaggttgttgattcctttagaacatgtataaatgatgtc |
745 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38246245 |
tctaagaaggttgttgattcctttagaacatgtataaatgatgtc |
38246201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 481 - 742
Target Start/End: Original strand, 46210505 - 46210762
Alignment:
| Q |
481 |
cctagaaggtataaataaaaaatagatgcctcgttctcctcgtcgcttaataaggtaggactcggaatgtcttagaggcgaagagggtaattttatgctt |
580 |
Q |
| |
|
||||| |||||||| | || |||||||| || || |||| |||||| ||||||||| |||| ||||| |||| || | | |||||||| |||||| |
|
|
| T |
46210505 |
cctagcaggtataagtgtaatatagatgcatcattttccttgtcgctaaataaggtatgacttaacgtgtctaagagacggataaggtaatttcatgctt |
46210604 |
T |
|
| Q |
581 |
gcaaaaagtacttggttctccccgctttgtgacgtcaatgcgggtgaagcaatgagtttatgtacgacacttgattgggtggcaaaccttcagtttgata |
680 |
Q |
| |
|
||||||| | ||||||||||| |||||| |||||||| ||||||| ||| |||| | ||||||||||| || ||||||||||| || |||| |
|
|
| T |
46210605 |
gcaaaaactgtctggttctccccattttgtgccgtcaatgaaagtgaagcgatgggtttgtatacgacacttg----ggcagcaaaccttcatttcgata |
46210700 |
T |
|
| Q |
681 |
atgtagactttgggttagattctaagaaggttgttgattcctttagaacatgtataaatgat |
742 |
Q |
| |
|
|||| || |||| |||||||||||||||||||| |||| ||||| |||| |||| ||||| |
|
|
| T |
46210701 |
atgttgattttgttttagattctaagaaggttgtcgattattttaggacatatatagatgat |
46210762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 37 - 374
Target Start/End: Complemental strand, 9170894 - 9170556
Alignment:
| Q |
37 |
actcgagcacaacgtagtagtagaggtgtgtcttgtccaaccgaatgtgtaatttgtggaaataattacgaggacatcattcatgttttattcgaatgct |
136 |
Q |
| |
|
|||| ||||| || |||||||| | | ||||||||||| | | |||||||||||||||||||||||||||||| ||||||||||||||| |||| || |
|
|
| T |
9170894 |
actcaagcacgacttagtagtaaatgcgtgtcttgtcctaatgcatgtgtaatttgtggaaataattacgaggatgacattcatgttttatttgaatact |
9170795 |
T |
|
| Q |
137 |
cgagtgctgtgcaagtttggcatgccgtgaatttatgggataagattgatcgtgtgcttcgtcaggattataatatgaattatgttatttttactttgta |
236 |
Q |
| |
|
| ||||| ||||||||| || || |||||||||| ||| |||| |||| | |||| || ||||||||||||||||||||||||||||||||||| |
|
|
| T |
9170794 |
caagtgccttgcaagtttagcgtgtagtgaatttataggacaagaatgataaagcgcttagttgggattataatatgaattatgttatttttactttgtt |
9170695 |
T |
|
| Q |
237 |
gcaaca-gcttgctccaatacagagtgaacattttgcagcaatactatggagcctatgggagcacagaaacctgaaactttggcaacaaactaacgagac |
335 |
Q |
| |
|
|||||| |||| ||||||| |||||||| ||||||| |||||||||||||||||||||| | | |||||||| ||||||||||||||||||| | || |
|
|
| T |
9170694 |
gcaacaagcttactccaatgcagagtgaccattttgtagcaatactatggagcctatggaaacgtagaaacctaaaactttggcaacaaactagctgcac |
9170595 |
T |
|
| Q |
336 |
taatgtgcaggttatagagcgtgcaaagtagttgatgga |
374 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9170594 |
taatgtgcaagttatagagcgtgcaaagtagttgatgga |
9170556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 530 - 745
Target Start/End: Complemental strand, 9170437 - 9170224
Alignment:
| Q |
530 |
ataaggtaggactcggaatgt--cttagaggcgaagagggtaattttatgcttgcaaaaagtacttggttctccccgctttgtgacgtcaatgcgggtga |
627 |
Q |
| |
|
|||||||| |||| ||||||| ||||||| ||| || |||||||| ||||||||||||| || | ||||||| |||| ||||||| || | |||| |
|
|
| T |
9170437 |
ataaggtatgacttggaatgtgtcttagagacgaggatggtaatttaatgcttgcaaaaactatctatttctcccagcttcatgacgtcggtgtgagtga |
9170338 |
T |
|
| Q |
628 |
agcaatgagtttatgtacgacacttgattgggtggcaaaccttcagtttgataatgtagactttgggttagattctaagaaggttgttgattcctttaga |
727 |
Q |
| |
|
|| |||||| || || |||| |||||||||||||||| ||| ||||||||||||||| ||| |||||||| ||||| ||||||| || |||||| |
|
|
| T |
9170337 |
agtgatgagtccatataagacatttgattgggtggcaaagctt-ggtttgataatgtagattttttgttagattataaga---ttgttgactcttttaga |
9170242 |
T |
|
| Q |
728 |
acatgtataaatgatgtc |
745 |
Q |
| |
|
||||||||| || ||||| |
|
|
| T |
9170241 |
acatgtatagataatgtc |
9170224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 2e-48; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 331 - 745
Target Start/End: Original strand, 12224086 - 12224489
Alignment:
| Q |
331 |
gagactaatgtgcaggttatagagcgtgcaaagtagttgatggatgaatggagacatgcacaagtcattcgtttaggtagtgtaactccctctagttctg |
430 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| |||||||| || ||||||| ||| ||||| ||||| | |||| ||| |||||||| || ||||| |
|
|
| T |
12224086 |
gagactaatgtgcaggttatatagcgtgcaaagtatttgatggaaga-tggagacgtgctcaagttattcgctcaggtggtgaaactccctttacttctg |
12224184 |
T |
|
| Q |
431 |
atccacatgggccgactcttatagcttggtaacaatgggtaaaaccagcccctagaaggtataaataaaaaatagatgcctcgttctcctcgtcgcttaa |
530 |
Q |
| |
|
|||||||||||||| |||||||||||| | ||||| |||| || |||| | | |||||| || ||| ||| |||||||||||||| | | || |
|
|
| T |
12224185 |
atccacatgggccgtctcttatagcttctcactgatgggcaaaaataggcccttg--gaaataaatgcaatatatatgtctcgttctcctcgttgttcaa |
12224282 |
T |
|
| Q |
531 |
taaggtaggactcggaa--tgtcttagaggcgaagagggtaattttatgcttgcaaaaagtacttggttctccccgctttgtgacgtcaatgcgggtgaa |
628 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||| || || |||||| ||||| ||| ||||||||||||||| ||||||||||| || |
|
|
| T |
12224283 |
caaggtaggacttagaatgtgtcttagagatgaagaaggaaaatttatgattgcataaactacttggttctccccattttgtgacgtc---------gat |
12224373 |
T |
|
| Q |
629 |
gcaatgagtttatgtacgacacttgattgggtggcaaaccttcagtttgataatgtagactttgggttagattctaagaaggttgttgattcctttagaa |
728 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||| ||||||||||||| |||||||||| ||| |||||||||||||||||||||| |||| ||||| | |
|
|
| T |
12224374 |
gcaacaagtttatatacgacacttgattgggtgccaaaccttcagttcaataatgtagattttctgttagattctaagaaggttgtt-attcttttagga |
12224472 |
T |
|
| Q |
729 |
catgtataaatgatgtc |
745 |
Q |
| |
|
||| ||| |||||||| |
|
|
| T |
12224473 |
catatattgatgatgtc |
12224489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 60 - 279
Target Start/End: Original strand, 12223856 - 12224079
Alignment:
| Q |
60 |
aggtgtgtcttgtccaaccgaatgtgtaatttgtggaaataattacgaggacatcattcatgttttattcgaatgctcgagtgctgtgcaagtttggcat |
159 |
Q |
| |
|
|||||||||||||||| | ||||||||||||| |||||||||||||||||||| ||||||||||||||| ||||| || || |||||||||||| | |
|
|
| T |
12223856 |
aggtgtgtcttgtccatctgaatgtgtaatttttggaaataattacgaggacaacattcatgttttattggaatgtctgactgtcgtgcaagtttggtgt |
12223955 |
T |
|
| Q |
160 |
gccgtgaatttatggga----taagattgatcgtgtgcttcgtcaggattataatatgaattatgttatttttactttgtagcaacagcttgctccaata |
255 |
Q |
| |
|
|| || ||||||||||| ||||||||| ||| ||||| ||| |||||||||||| ||||||||||||||||||||| |||||| || ||| ||| |
|
|
| T |
12223956 |
gcggtaaatttatgggataattaagattgacagtgcgcttcatcaagattataatatggattatgttatttttactttgttgcaacaaattactctaatg |
12224055 |
T |
|
| Q |
256 |
cagagtgaacattttgcagcaata |
279 |
Q |
| |
|
||||||||||||||| ||||||| |
|
|
| T |
12224056 |
tagagtgaacattttgtagcaata |
12224079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 89; E-Value: 2e-42
Query Start/End: Original strand, 29 - 423
Target Start/End: Original strand, 12226022 - 12226444
Alignment:
| Q |
29 |
gtttccccactcgagcacaacgtagtagtagaggtgtgtcttgtccaaccgaatgtgtaatttgtggaaataattacgaggacatcattcatgttttatt |
128 |
Q |
| |
|
|||| |||| ||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||||| | |
|
|
| T |
12226022 |
gttttcccagtcgagcacaacttagtagtagaggtgtgtcttgttcaacggaatgtgtaatttgtggaaataattatgaggatgacattcatgttttact |
12226121 |
T |
|
| Q |
129 |
cgaatgctcgagtgctgtgcaagtttggcatgccgtgaatttatgggataagattgatcgtgtgcttcgtcaggattataatatgaat--------tatg |
220 |
Q |
| |
|
||||| ||||||| || ||||||| | | ||||||||||||||||||||||| ||||||| |||| |||||||||| || |||| |
|
|
| T |
12226122 |
agaatgttcgagtgtcgtacaagtttagtgagtagtgaatttatgggataagattgacaatgtgctttgtcaaaattataatatatattaatatagtatg |
12226221 |
T |
|
| Q |
221 |
ttatttttactttgtagcaacagcttgctccaatac--------------------agagtgaacattttgcagcaatactatggagcctatgggagcac |
300 |
Q |
| |
|
||||||||||||||| |||||| ||| || ||||| ||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
12226222 |
ttatttttactttgttgcaacaacttaatctaatacagagtgaacaaatctaatacagagtgaacattttgcagcaatactatggagcctatgaaattgc |
12226321 |
T |
|
| Q |
301 |
agaaacctgaaactttggcaacaaactaacgagactaatgtgcaggttatagagcgtgcaaagtagttgatggatgaatggagacatgcacaagtcattc |
400 |
Q |
| |
|
||||||||||||||| ||||||||| | | |||||||||||||| ||||||||| ||| ||| |||||||||| ||| ||||| || || | |||| |
|
|
| T |
12226322 |
agaaacctgaaacttcggcaacaaattgaggagactaatgtgcatgttatagagtgtgtgaagcagttgatggaagaaaagagacgcgcgaaaattattc |
12226421 |
T |
|
| Q |
401 |
gtttaggtagtgtaactccctct |
423 |
Q |
| |
|
| | |||||||| |||||||||| |
|
|
| T |
12226422 |
gctcaggtagtgcaactccctct |
12226444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 548 - 720
Target Start/End: Complemental strand, 23316443 - 23316271
Alignment:
| Q |
548 |
tgtcttagaggcgaagagggtaattttatgcttgcaaaaagtacttggttctccccgctttgtgacgtcaatgcgggtgaagcaatgagtttatgtacga |
647 |
Q |
| |
|
|||||| ||| |||||| ||||||||| |||||||||||| | |||||| | |||||| ||||||||||| | ||||||||| |||||||||| ||| |
|
|
| T |
23316443 |
tgtcttggagacgaagaaggtaattttgtgcttgcaaaaactgtttggttttgcccgctatgtgacgtcaaagtgggtgaagcgatgagtttataaacgg |
23316344 |
T |
|
| Q |
648 |
cacttgattgggtggcaaaccttcagtttgataatgtagactttgggttagattctaagaaggttgttgattc |
720 |
Q |
| |
|
|||||||||||||| ||| ||| |||| |||||||||| |||| ||| || |||||||||||||| ||||| |
|
|
| T |
23316343 |
aacttgattgggtggtaaatctttagttccataatgtagattttgtgttcgactctaagaaggttgtcgattc |
23316271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 420 - 630
Target Start/End: Original strand, 32944733 - 32944943
Alignment:
| Q |
420 |
ctctagttctgatccacatgggccgactcttatagcttggtaacaatgggtaaaaccagcccctagaaggtataaataaaaaatagatgcctcgttctcc |
519 |
Q |
| |
|
||||| || ||||||||| ||| ||||| ||| | ||| ||| ||||| ||||||| | |||||||||||||||| || ||| ||| || | ||| | |
|
|
| T |
32944733 |
ctctaattttgatccacaggggtcgacttttacaactttgtactaatggataaaaccgactcctagaaggtataaatgcaatatatatgtcttgatcttc |
32944832 |
T |
|
| Q |
520 |
tcgtcgcttaataaggtaggactcggaat--gtcttagaggcgaagagggtaattttatgcttgcaaaaagtacttggttctccccgctttgtgacgtca |
617 |
Q |
| |
|
| ||||||||||||||||||||| |||| ||||||||| | |||| || ||| |||||||||||||| || |||||| | |||||||||||| |
|
|
| T |
32944833 |
ttgtcgcttaataaggtaggactttgaatgcgtcttagagac--agagtgtgattatatgcttgcaaaaactatccggttctatctgctttgtgacgttg |
32944930 |
T |
|
| Q |
618 |
atgcgggtgaagc |
630 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
32944931 |
atgtgggtgaagc |
32944943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 666 - 733
Target Start/End: Original strand, 712156 - 712223
Alignment:
| Q |
666 |
accttcagtttgataatgtagactttgggttagattctaagaaggttgttgattcctttagaacatgt |
733 |
Q |
| |
|
||||||| |||||||||||||| |||| |||| |||||||||||||| ||| | |||||||||||| |
|
|
| T |
712156 |
accttcaatttgataatgtagattttgctctagactctaagaaggttgtggatgcttttagaacatgt |
712223 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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