View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11066_low_3 (Length: 630)
Name: NF11066_low_3
Description: NF11066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11066_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 612
Target Start/End: Complemental strand, 40275878 - 40275259
Alignment:
| Q |
1 |
cttgtaatacctgataatgtatgtaaataaagcttggttttggttttcaaagtttttaataggaaaaatgtttgtaagttagttagtacttgtgtcagtt |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40275878 |
cttgtaatacctgataatgtatgtaaataaagcttggttttggttttcaaagtttttaataggaaaaatgtttgtaagttagttagtacttgtgttagtt |
40275779 |
T |
|
| Q |
101 |
ttcagaggttaaaccc---ttcaccgccttaaaattttctt-ggtgtttcttaactcaccaaccgaactatttaagtgggacaacat----aacctagag |
192 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||| || ||||||| ||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
40275778 |
ttcagaggttaaacccagcttcaccgccttaaatttttttttggtgttttttaactccacaaccgaactatttaagtgggacaacatgcataacctagag |
40275679 |
T |
|
| Q |
193 |
ttggattattcatggcttaatttctgcatgggttccttttgacatatttttaatcaaattggatcctctcattcactattctctacatcgctctatctct |
292 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40275678 |
ttggattattcatggcttaatttttgcatgggttccttttgacatatttttaatcaaattggatcctctcattcactattctctacatctctctatctct |
40275579 |
T |
|
| Q |
293 |
ctcttgatagttttattattttttaatgaaaagagagagctaagggatagagatttaagagatcgatgtagataaatagtgaaggagatgatccaaatct |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||| ||||||| |
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| T |
40275578 |
ctcttgatagttttattattttttaatgaaaagagagagctaagggatagaaatttaagagatggatgtagataaatagcgaaggagatgattcaaatct |
40275479 |
T |
|
| Q |
393 |
gtttttcataagttacatttatgtttattaatctaccccagttatacaaattgtatttgagattagcaacttagcttaaaaagatatgtagtgatttggt |
492 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
40275478 |
gtttttcaaaagttacatttatgtttattaatctaccccagttatacaaattgtatttgagattagcaacttagcataaaaagatatatagtgatttggt |
40275379 |
T |
|
| Q |
493 |
gtcaagaggcccttacagttgcaatctttacttgtgtacctaggtttatgagagtcagtgagaatgttgctaagccagtcacatgaatggaaaattttac |
592 |
Q |
| |
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|||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
40275378 |
gtcaagaggctcttacagttacaatctttacttgtgtacctaggtttatgagagtcagtgagaatgttgctaagccagtcacatgaatggaaaatgttac |
40275279 |
T |
|
| Q |
593 |
atgatatcgtatttgatgtg |
612 |
Q |
| |
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||||||| |||||||||||| |
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| T |
40275278 |
atgatattgtatttgatgtg |
40275259 |
T |
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