View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11066_low_4 (Length: 609)
Name: NF11066_low_4
Description: NF11066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11066_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 18 - 598
Target Start/End: Original strand, 4894547 - 4895127
Alignment:
| Q |
18 |
ggttccagttgccgtgcttaatggacatggttatgctgttagaaaggttaaattttcgccgcatgtgaggaatttgttggtgtcttgttcttatgatatg |
117 |
Q |
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| T |
4894547 |
ggttccagttgccgtgcttaatggacatggttatgctgttagaaaggttaaattttcgccgcatgtgaggaatttgttggtgtcttgttcttatgatatg |
4894646 |
T |
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| Q |
118 |
actgtttgtgtttgggattttatggtggaggatgctttggtgagtaggtatgatcatcatactgagtttgctgttggggttgatatgagtgttcttgttg |
217 |
Q |
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| T |
4894647 |
actgtttgtgtttgggattttatggtggaggatgctttggtgagtaggtatgatcatcatactgagtttgctgttggggttgatatgagtgttcttgttg |
4894746 |
T |
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| Q |
218 |
aagggcttcttgctagtactggttgggatgaacttgtttatgtttggcaacatggaactgatcctagggcatcttgaaagggaaggtactaaaaacttag |
317 |
Q |
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| T |
4894747 |
aagggcttcttgctagtactggttgggatgaacttgtttatgtttggcaacatggaactgatcctagggcatcttgaaagggaaggtactaaaaacttag |
4894846 |
T |
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| Q |
318 |
gtttatgtttttgttccccttttctttttatatatgtggttaggatgagagggatattgggaatttccaataggttgttgtatcaatgttgaggatgaac |
417 |
Q |
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| T |
4894847 |
gtttatgtttttgttccctttttctttttatatatgtggttaggatgagagggatattgggaatttccaataggttgttgtatcaatgttgaggatgaac |
4894946 |
T |
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| Q |
418 |
atatacatacataataatacatctctttcattgattggttctccgctgtatactgattttgataagcatgaattcattatttatgatggttcatcatcaa |
517 |
Q |
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| T |
4894947 |
atatacatacataataatacatctctttcattgattggttctccactgtatactgattttgataagcatgaattcattatctatgatggttcatcatcaa |
4895046 |
T |
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| Q |
518 |
cgttattcatttatatgattaattttggtttccattttgttgcttaatgaaccgtgcttgataaattgtttgtctgatgtc |
598 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
4895047 |
cgttattcatttatatgattaattttggtttccattttgttgcttaatgaaccgtgcttgataaattgtttgtctgttgtc |
4895127 |
T |
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