View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11066_low_6 (Length: 471)

Name: NF11066_low_6
Description: NF11066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11066_low_6
NF11066_low_6
[»] chr4 (1 HSPs)
chr4 (23-460)||(2619059-2619496)
[»] chr1 (5 HSPs)
chr1 (277-341)||(43391456-43391520)
chr1 (275-341)||(25981864-25981930)
chr1 (317-401)||(17473144-17473226)
chr1 (275-339)||(15707553-15707617)
chr1 (315-375)||(46937602-46937662)
[»] chr8 (2 HSPs)
chr8 (278-350)||(42822651-42822723)
chr8 (342-386)||(33120556-33120600)
[»] chr3 (1 HSPs)
chr3 (315-375)||(2990951-2991011)
[»] chr5 (2 HSPs)
chr5 (275-374)||(27725540-27725639)
chr5 (309-350)||(41846737-41846778)


Alignment Details
Target: chr4 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 23 - 460
Target Start/End: Complemental strand, 2619496 - 2619059
Alignment:
Q  23 aatggttggatagattcggataccctttgcatgactgaaaccagattctatcatgatgagctctctaatcagaccccacataagaagaagtattccaaaa 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2619496 aatggttggatagattcggataccctttgcatgactgaaaccagattctatcatgatgagttctctaatcagaccccacataagaagaagtattccaaaa 2619397  T
Q  123 agtcccattcttcctggttttatcaaacccaagattgctcctcctacagccaaatagcttcctgcaagaacctgcaggaagaacccaacttgaaaaatga 222  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||    
T  2619396 agtcccattcttcctggttttaacagacccaagattgctcctcctacagccaaatagcttcctgcaagaacctgcaggaaaaacccaacttaaaaaatga 2619297  T
Q  223 gtggcaaagctaaacccttcagaaagttcatttatcaatacaatttgaggcggtgttgtcaatcgcagattgcaaaaaatatcagcttgctaaaattctg 322  Q
    ||| |||||||||||||||||||| ||||||||| | ||||||||||||| |||||||||||| ||||||||||||||||||||| ||| ||||||||||    
T  2619296 gtgtcaaagctaaacccttcagaaggttcatttaccgatacaatttgaggtggtgttgtcaattgcagattgcaaaaaatatcagtttgttaaaattctg 2619197  T
Q  323 ctatgcaacagtgctatagagccgctatttggcaaaattttctactaaatagcataatgcagaagaatatcaatttgttcgctacactataacgctgtag 422  Q
    |||||| ||||||||||||||  |||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  2619196 ctatgcgacagtgctatagagatgctatttggcaaaattttgtattaaatagcataatgcagaagaatatcaatttgttcgctacactataacgctatag 2619097  T
Q  423 cactgacgtaaccgttatgttaagccaatgtttttctt 460  Q
       |||||||||||||||||||||||| ||||||||||    
T  2619096 acttgacgtaaccgttatgttaagccattgtttttctt 2619059  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 277 - 341
Target Start/End: Original strand, 43391456 - 43391520
Alignment:
Q  277 gttgtcaatcgcagattgcaaaaaatatcagcttgctaaaattctgctatgcaacagtgctatag 341  Q
    |||||||||||||||| |||||||||| ||| ||| |  | ||||||||||||||||||||||||    
T  43391456 gttgtcaatcgcagatcgcaaaaaatagcagtttgtttgagttctgctatgcaacagtgctatag 43391520  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 275 - 341
Target Start/End: Original strand, 25981864 - 25981930
Alignment:
Q  275 gtgttgtcaatcgcagattgcaaaaaatatcagcttgctaaaattctgctatgcaacagtgctatag 341  Q
    ||||||||||| |||||| ||| || |||  || ||| | |||||||||||||||||||||||||||    
T  25981864 gtgttgtcaattgcagatagcagaatatacgaggttgtttaaattctgctatgcaacagtgctatag 25981930  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 401
Target Start/End: Complemental strand, 17473226 - 17473144
Alignment:
Q  317 attctgctatgcaacagtgctatagagccgctatttggcaaaattttctactaaatagcataatgcagaagaatatcaatttgtt 401  Q
    |||||||| |||||||||| ||||| |  |||||||| ||| ||||| |||||||||||||| |||| || |||| || ||||||    
T  17473226 attctgctttgcaacagtgttatagcg--gctatttgacaatattttgtactaaatagcatattgcaaaacaatagcattttgtt 17473144  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 275 - 339
Target Start/End: Original strand, 15707553 - 15707617
Alignment:
Q  275 gtgttgtcaatcgcagattgcaaaaaatatcagcttgctaaaattctgctatgcaacagtgctat 339  Q
    |||||||||||| ||||||| |||||||| ||| ||| | |||||| ||||||| | ||||||||    
T  15707553 gtgttgtcaatcacagattgtaaaaaatagcagtttgttcaaattccgctatgctatagtgctat 15707617  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 46937662 - 46937602
Alignment:
Q  315 aaattctgctatgcaacagtgctatagagccgctatttggcaaaattttctactaaatagc 375  Q
    |||||| |||||||||||||| ||||| ||| ||||||  ||| ||||| |||||||||||    
T  46937662 aaattccgctatgcaacagtgttatagcgccactatttcacaatattttgtactaaatagc 46937602  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 278 - 350
Target Start/End: Complemental strand, 42822723 - 42822651
Alignment:
Q  278 ttgtcaatcgcagattgcaaaaaatatcagcttgctaaaattctgctatgcaacagtgctatagagccgctat 350  Q
    |||||||| |||||| ||  |||||||||| ||| | ||||||  ||||||||||||||||||| ||||||||    
T  42822723 ttgtcaattgcagatagcggaaaatatcagtttgttcaaattccactatgcaacagtgctatagcgccgctat 42822651  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 342 - 386
Target Start/End: Original strand, 33120556 - 33120600
Alignment:
Q  342 agccgctatttggcaaaattttctactaaatagcataatgcagaa 386  Q
    |||||||||||| ||| ||||| |||||||||||||| |||||||    
T  33120556 agccgctatttgacaacattttgtactaaatagcatattgcagaa 33120600  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 315 - 375
Target Start/End: Original strand, 2990951 - 2991011
Alignment:
Q  315 aaattctgctatgcaacagtgctatagagccgctatttggcaaaattttctactaaatagc 375  Q
    |||||| |||||||||||||| ||||| ||| ||||||| ||| ||||| |||||||||||    
T  2990951 aaattccgctatgcaacagtgatatagggccactatttgacaacattttgtactaaatagc 2991011  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 374
Target Start/End: Complemental strand, 27725639 - 27725540
Alignment:
Q  275 gtgttgtcaatcgcagattgcaaaaaatatcagcttgctaaaattctgctatgcaacagtgctatagagccgctatttggcaaaattttctactaaatag 374  Q
    ||||||||||  |||||| ||||||| || ||| ||| | ||||||| |||   |||| |||||||| ||||||||||| ||| ||||| ||||||||||    
T  27725639 gtgttgtcaactgcagatcgcaaaaagtagcagtttgatcaaattctactaccgaacaatgctatagtgccgctatttgacaatattttgtactaaatag 27725540  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 350
Target Start/End: Original strand, 41846737 - 41846778
Alignment:
Q  309 ttgctaaaattctgctatgcaacagtgctatagagccgctat 350  Q
    ||||| ||||||||||||||| ||||||||||| ||||||||    
T  41846737 ttgctcaaattctgctatgcagcagtgctatagcgccgctat 41846778  T

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