View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11066_low_8 (Length: 394)
Name: NF11066_low_8
Description: NF11066
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11066_low_8 |
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Alignment Details
Target: chr2 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 41637246 - 41636870
Alignment:
| Q |
1 |
agaatggaactagttgagggttgtaacataggaaagaaattgttggtttccgtttgaacttattcgannnnnnngaaaggttatttggttttgcgtcaat |
100 |
Q |
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| T |
41637246 |
agaatggaactagttgagggttgtaacataggaaagaaagtgttggtttccgtatgaacttgtttgatttttttgaaaggttatttggttttgcgtcaat |
41637147 |
T |
|
| Q |
101 |
attaagagatatttggttaaagagaaaggaaggaacaagtgaacggttagaagtggaaaagagaaggaatggaaagttgatgttgaagagtgaaagagag |
200 |
Q |
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| T |
41637146 |
attaagagatatttggttaaagagaaaggaaggaacaagtgaacggttagaagtggaaaagagaaggaatggagagttgatgttgaagagtgaaagag-- |
41637049 |
T |
|
| Q |
201 |
tgtggaattgcttgttgttgaagaaagtgttgtaagatgagttagttttggaagtgaacttttgaattttgaaagacagtttgaattaggtaaatgatgt |
300 |
Q |
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| T |
41637048 |
tgtggaattgcttgttgttgaagaaagtgttgtaagatgagttagttttggaagtgaacttttgaattttgaaagacagtttgaattaggtaaatgatgt |
41636949 |
T |
|
| Q |
301 |
tcaatatatttggatgaaagggtatttgaagaggctatttgaaagaattttagcggcattactctctatttgaagtttg |
379 |
Q |
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| T |
41636948 |
tcaatatatttggatgaaagggtatttgaagaggctatttgaaagaattttagcggcattactctctatttgaagtttg |
41636870 |
T |
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