View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11067_high_1 (Length: 343)
Name: NF11067_high_1
Description: NF11067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11067_high_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 311; Significance: 1e-175; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 2 - 324
Target Start/End: Complemental strand, 3304383 - 3304061
Alignment:
| Q |
2 |
gtaagagaagtatcttttcgcatagaagatgtaatcgacgagtatatcatgtgcgaggcgcaaaggatgaaccattctatattcacagcaacactacaaa |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3304383 |
gtaagagaagtatcttttcgcatagaagatgtaatcgacgagtatatcatgtgcgaggcgcaaaggatgaaccattctatattcacagcaacactacaaa |
3304284 |
T |
|
| Q |
102 |
tgtttcctggtttgctcagaatcatgaatccacaccaccagattgcgtctcagattcaagacatcaagtcaacacttggtaaaatcaaagaaagaagaac |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3304283 |
tgtttcctggtttgctcagaatcatgaatccacaccaccagattgcttctcagattcaagacatcaagtcaacacttggtaaaatcaaagaaagaagaac |
3304184 |
T |
|
| Q |
202 |
aagatttccatttcagtctgataatgaatcaggaagctaccgagggtccaaagctcctagaattggtgaccctcgaatggctccctatttcattgaagag |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3304183 |
aagatttccatttcagtctgataatgaatcaggaagctacagagggtccaaagctcctagaattggtgaccctcgaatggctccctatttcattgaagag |
3304084 |
T |
|
| Q |
302 |
actcaagttgtggggtttgagtc |
324 |
Q |
| |
|
|||||||||||||| |||||||| |
|
|
| T |
3304083 |
actcaagttgtgggatttgagtc |
3304061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 159 - 324
Target Start/End: Complemental strand, 3357644 - 3357479
Alignment:
| Q |
159 |
aagacatcaagtcaacacttggtaaaatcaaagaaagaagaacaagatttccatttcagtctgataatgaatcaggaagctaccgagggtccaaagctcc |
258 |
Q |
| |
|
|||||||||||| | |||||| | ||||||||||||||| |||| ||| |||||||||| | || ||||| ||||||| ||||| | |||||||| |
|
|
| T |
3357644 |
aagacatcaagttatcacttgctggaatcaaagaaagaagtacaatgtttgagtttcagtctggaagtggatcagaaagctacagagggactaaagctcc |
3357545 |
T |
|
| Q |
259 |
tagaattggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtc |
324 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3357544 |
tagaattggtgaccctcgaatggctccttatttcattgaagagactcaagttgtagggtttgagtc |
3357479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 138 - 325
Target Start/End: Complemental strand, 3310920 - 3310733
Alignment:
| Q |
138 |
accagattgcgtctcagattcaagacatcaagtcaacacttggtaaaatcaaagaaagaagaacaagatttccatttcagtctgataatgaatcaggaag |
237 |
Q |
| |
|
|||||||||| || ||||| ||||||||||| | |||||||||||||||||||||||| |||| | ||| ||||||||||| | |||||| ||||| |
|
|
| T |
3310920 |
accagattgcttcaaagattaaagacatcaaggaatcacttggtaaaatcaaagaaagaatgacaacacttctgtttcagtctgaaagtgaatctggaag |
3310821 |
T |
|
| Q |
238 |
ctaccgagggtccaaagctcctagaattggtgaccctcgaatggct-ccctatttcattgaagagactcaagttgtggggtttgagtct |
325 |
Q |
| |
|
||| |||| | |||||||||||||||| | | ||||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |
|
|
| T |
3310820 |
ctatagaggaactaaagctcctagaattgataatactcgaatggcttccctatt-cattgaagagactcaagttgtggggattgagtct |
3310733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 138 - 322
Target Start/End: Complemental strand, 3322519 - 3322335
Alignment:
| Q |
138 |
accagattgcgtctcagattcaagacatcaagtcaacacttggtaaaatcaaagaaagaaga-acaagatttccatttcagtctgataatgaatcaggaa |
236 |
Q |
| |
|
|||||||||| || ||||| ||||||||||| | ||||||||||||||||||||| ||| ||| | ||| ||||| ||||| | || ||||| || |
|
|
| T |
3322519 |
accagattgcttcaaagattaaagacatcaaggaatcacttggtaaaatcaaagaaaaaagtgacatg-tttaagtttcattctgaaagtggatcagaaa |
3322421 |
T |
|
| Q |
237 |
gctaccgagggtccaaagctcctagaattggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgag |
322 |
Q |
| |
|
||||||||||| | | | |||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||| |
|
|
| T |
3322420 |
gctaccgagggactacaactcctagaattggtgaccctcgaatggctctttatttccctgaagagactcaagttgtggggtttgag |
3322335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 137 - 324
Target Start/End: Original strand, 3200782 - 3200969
Alignment:
| Q |
137 |
caccagattgcgtctcagattcaagacatcaagtcaacacttggtaaaatcaaagaaagaagaacaagatttccatttcagtctgataatgaatcaggaa |
236 |
Q |
| |
|
||||||||||| ||| |||| ||||||||||||| | |||||||| |||||||||||||||| | | | | || || ||||||| | || || || || |
|
|
| T |
3200782 |
caccagattgcttctgagatacaagacatcaagttatcacttggtgaaatcaaagaaagaagtcaatggtatgcagttaagtctgaaagtggattagaaa |
3200881 |
T |
|
| Q |
237 |
gctaccgagggtccaaagctcctagaattggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtc |
324 |
Q |
| |
|
| || ||||| |||||||| ||||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
3200882 |
gttatagaggggttaaagctccaagaattgatgatactcgaatggctccttatttcattcaagagactcaagttgtggggtttgagtc |
3200969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 268 - 324
Target Start/End: Original strand, 3721513 - 3721569
Alignment:
| Q |
268 |
tgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtc |
324 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3721513 |
tgaccctcgaatggctccttatttcattgaagagactcaagttgttgggtttgagtc |
3721569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 3322662 - 3322617
Alignment:
| Q |
1 |
ggtaagagaagtatcttttcgcatagaagatgtaatcgacgagtat |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
3322662 |
ggtaagagaagtatcttttcgcatagaagatgtagttgacgagtat |
3322617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 3221644 - 3221584
Alignment:
| Q |
264 |
ttggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtc |
324 |
Q |
| |
|
||||||| | |||||||||| | ||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
3221644 |
ttggtgatcttcgaatggcttcgcatttcattgaagagaaccaagttgtgggatttgagtc |
3221584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 41947392 - 41947332
Alignment:
| Q |
264 |
ttggtgaccctcgaatggctccctatttcattgaagagactcaagttgtggggtttgagtc |
324 |
Q |
| |
|
||||||| | |||||||||| | |||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
41947392 |
ttggtgatcttcgaatggcttcgcatttcattaaagagactcaagttgtgggatttgagtc |
41947332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University