View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11067_high_1_N (Length: 400)
Name: NF11067_high_1_N
Description: NF11067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11067_high_1_N |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 2 - 380
Target Start/End: Complemental strand, 32707076 - 32706698
Alignment:
| Q |
2 |
cagcagcagatgtcaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatttagacattgcacaaaaaact |
101 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32707076 |
cagcagcagatgtaaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggcacaatttagacattgcacaaaaaact |
32706977 |
T |
|
| Q |
102 |
gcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatctgggatatttggaagtgaaa |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32706976 |
gcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatctgggatatttggaagtgaaa |
32706877 |
T |
|
| Q |
202 |
ttgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgtcgttacctgaaatcgacgcattctgatataggaaaaagta |
301 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
32706876 |
ttgatgcaccacgcctatagctgctatgcctgtgtcttggaaagtagaatttgtaatcgtcgttagctgaaatcgacgcattctgatataggaaaaagta |
32706777 |
T |
|
| Q |
302 |
atagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataataaagaggaaggagctaat |
380 |
Q |
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| T |
32706776 |
atagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaatataataaagaggaaggagctaat |
32706698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 356
Target Start/End: Complemental strand, 32749306 - 32749254
Alignment:
| Q |
304 |
agtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatccaaa |
356 |
Q |
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||||||| |||| |||| |||||||||||||||||||||| ||||||||||| |
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| T |
32749306 |
agtgaaagcagcatagtaccaattttcaatctctacaaacatagaaatccaaa |
32749254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 2 - 261
Target Start/End: Complemental strand, 3001875 - 3001615
Alignment:
| Q |
2 |
cagcagcagatgtcaaagcacattatattcatattcataaccaacgcatgctagtaaaatatttccgtagcggca-caatttagacattgcacaaaaaac |
100 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||| |
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| T |
3001875 |
cagcagcagatgccaaagcacattatattcatattcataaccaacacatgctagtaaaatatttccgtagtggcaacaatttagacattgcacaaaaaac |
3001776 |
T |
|
| Q |
101 |
tgcagtagcttacgtattgagaatcttaaaaacagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatctgggatatttggaagtgaa |
200 |
Q |
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||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
3001775 |
tgcagtagcttacgtattgagcatcttgaaagcagcacttcattttccaaaatgaggcaacaccatgcttaaagggatatgtgggatatttggaagtgaa |
3001676 |
T |
|
| Q |
201 |
attgatgctccacgcctatagctgctatacctgtgtcttggaaagtagaatttgtaatcgt |
261 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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| T |
3001675 |
attgatgcaccacgcctatacctgctatacctgtgtcttggagagtagaatttgtaatcgt |
3001615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 280 - 354
Target Start/End: Complemental strand, 3001291 - 3001217
Alignment:
| Q |
280 |
cattctgatataggaaaaagtaatagtgaaaacagcgcagtaacaattttcaatctctacaaacaaagaaatcca |
354 |
Q |
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||||||| ||||||||||||||| |||||||||||| ||||| ||||||||||| |||||||||||||||||||| |
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| T |
3001291 |
cattctggtataggaaaaagtaacagtgaaaacagcacagtaccaattttcaatatctacaaacaaagaaatcca |
3001217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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