View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11067_high_2 (Length: 375)
Name: NF11067_high_2
Description: NF11067
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11067_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 33 - 320
Target Start/End: Original strand, 47515698 - 47515986
Alignment:
| Q |
33 |
gtgatcccctcaggaccctcgcgagcaatagcaatgctgaattagttattcggttctatgtattgcatttccgatacaagctgtgccatgcaaaggtctt |
132 |
Q |
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| T |
47515698 |
gtgatcccctcaggaccctcgcgagcaatagcaatgctgaattagttattcggttctatgtattgcatttccaatacaagctgtgccatgcaaaggtctt |
47515797 |
T |
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| Q |
133 |
ccaagaggcagaacattgtcaatccttgtattagcacataggagtatcttttaattcaaggttacacacacagttttatacttttattgtttccaaaatg |
232 |
Q |
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|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47515798 |
ccaagaggcagaacattgtcaatccttgcattggcacataggagtatcttttaattcaaggttacacacacagttttatacttttattgtttccaaaatg |
47515897 |
T |
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| Q |
233 |
taaattcacatcaatttgttttaataatcacttgttacaat-nnnnnnntagtatctaagttgctgactagtcgattgacacaggttct |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||| |
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| T |
47515898 |
taaattcacatcaatttgttttaataatcacttgttacaataaaaaaaatagtatctaagttgctgactagtcaattgaaacaggttct |
47515986 |
T |
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