View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11068_high_1 (Length: 642)
Name: NF11068_high_1
Description: NF11068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11068_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 564; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 564; E-Value: 0
Query Start/End: Original strand, 19 - 632
Target Start/End: Complemental strand, 33823884 - 33823278
Alignment:
| Q |
19 |
ccatgatcatatagtgtaacatcaaattggtattggtgtacaattagaaattaataagcatgattttataagttaaaaaattatgtttgcacttatctta |
118 |
Q |
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| T |
33823884 |
ccatgatcatatagtgtaacatcaaattggtattggtgtacaattagaaattaataagcatgatttaataagtt-------tatgtttgcacttatctta |
33823792 |
T |
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| Q |
119 |
tttcagacagaactgatacttgacaaaggggtaaacgacattatttgcagatgactttgactattgtgactaaatattgattctggcatttgtgagtaaa |
218 |
Q |
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| T |
33823791 |
tttcagacagaactgatacttgacaaaggggtaaacgacattatttgcagatgactttgactattgtgactaaatattgattctggcatttgtgagtaaa |
33823692 |
T |
|
| Q |
219 |
atgaggaaaggaaaataagtgaacatatagtgaatggccattgtctctgaagtcacatgtaggttcagtcatgttatttaatgtacaagcagcatgcatg |
318 |
Q |
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| T |
33823691 |
atgaggaaaggaaaataagtgaacatatagtgaatggccattgtctctgaagtcacatgtaggttcagtcatgttatttaatgtacaagtagcatgcatg |
33823592 |
T |
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| Q |
319 |
tctttatgttcttctgttctttcaccaattggaaaagggtagatgtaagcaaagtaggaaacaaaatacgcatacaaattaacaatgctagactaataat |
418 |
Q |
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| T |
33823591 |
tctttatgttcttctgttctttcaccaattggaaaagggtagatgtaagcaaagaaggaaacaaaatatgcatacaaattaacaatgctagactaataat |
33823492 |
T |
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| Q |
419 |
aattcatacaccaaagattctttcagttgaactattgactcttcacatgtacttttataagtgtccttcacatgaaatgctctatttccataattagtgt |
518 |
Q |
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| T |
33823491 |
aattcatacaccaaagattctttcagttgaactattgattcttcacatgtacttttataagtgtccttcacatgaaatgctctatttccataattagtgt |
33823392 |
T |
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| Q |
519 |
ggacttattaattacaattgagcttaattaggacaattggtcgaatctcactttatagattgatgttagcatatataattaagttagagaccctgtgaca |
618 |
Q |
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| T |
33823391 |
ggacttattaattacaattgagcttaattaggacaattggtcgaatctcactttatagattgatgttagcatatataattaagttagagaccctgtgaca |
33823292 |
T |
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| Q |
619 |
ctgtcccccctttg |
632 |
Q |
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| T |
33823291 |
ctgtcccccttttg |
33823278 |
T |
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