View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11068_high_12 (Length: 238)
Name: NF11068_high_12
Description: NF11068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11068_high_12 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 15 - 238
Target Start/End: Complemental strand, 54013466 - 54013242
Alignment:
| Q |
15 |
agtctctcccttgtttagccaagatgaatcatgagtgtctt-gaaatacaaatcattagctttctcatttgatagttgagattttactttcaaagtttgg |
113 |
Q |
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| T |
54013466 |
agtctctcccttgtttagccaagatgaatcatgagtgtcttagaaatacaaatcattagctttctcatttgatagttgagattttactttcaaaatttgg |
54013367 |
T |
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| Q |
114 |
tctggtaaagagaccaattgaagtatatgtttggctgcgacatgtttgagtgttttcaaataaaattaattttacttccaaaattgattttaacttgaag |
213 |
Q |
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| T |
54013366 |
tctggtaaagagaccaattgaagtatatgtttggctgcgacatgtttgagtgttttcaaataaaattaattttacttccagaattgattttaacttgaag |
54013267 |
T |
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| Q |
214 |
ttaatagaatttgaagttttaacct |
238 |
Q |
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| T |
54013266 |
ttaatagaatttgaagttttaacct |
54013242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 33 - 112
Target Start/End: Complemental strand, 41807347 - 41807270
Alignment:
| Q |
33 |
ccaagatgaatcatgagtgtcttgaaatacaaatcattagctttctcatttgatagttgagattttactttcaaagtttg |
112 |
Q |
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| T |
41807347 |
ccaagatgaatcatgagtgtcttgaaatacaaatcattagttttctcatttgatagttgaga--ttactttcaaaatttg |
41807270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 217
Target Start/End: Original strand, 31804607 - 31804659
Alignment:
| Q |
164 |
tgttttcaaataaaattaattttacttccaaaattgattttaacttgaagttaa |
217 |
Q |
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| T |
31804607 |
tgttttctaataaaattaattttgttttcaaaattgatttt-acttgaagttaa |
31804659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 190 - 226
Target Start/End: Original strand, 16900739 - 16900775
Alignment:
| Q |
190 |
tccaaaattgattttaacttgaagttaatagaatttg |
226 |
Q |
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| T |
16900739 |
tccaaaattgattttaacttgaacttattagaatttg |
16900775 |
T |
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