View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11068_high_3 (Length: 510)

Name: NF11068_high_3
Description: NF11068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11068_high_3
NF11068_high_3
[»] chr6 (10 HSPs)
chr6 (96-220)||(14044493-14044617)
chr6 (235-316)||(13930401-13930482)
chr6 (14-94)||(14044249-14044329)
chr6 (415-510)||(14020191-14020286)
chr6 (442-510)||(13475837-13475905)
chr6 (14-92)||(13930070-13930147)
chr6 (259-300)||(14044622-14044663)
chr6 (235-285)||(13476292-13476342)
chr6 (116-173)||(13930348-13930405)
chr6 (327-379)||(13476233-13476285)
[»] chr3 (1 HSPs)
chr3 (457-510)||(24786856-24786909)


Alignment Details
Target: chr6 (Bit Score: 121; Significance: 9e-62; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 96 - 220
Target Start/End: Original strand, 14044493 - 14044617
Alignment:
Q  96 tatgatatatttttccatgaaatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgccaagtactaactccctccctaaagata 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  14044493 tatgatatatttttccatgaaatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgcaaagtactaactccctccctaaagata 14044592  T
Q  196 ttattgccattctttctaaacagag 220  Q
    |||||||||||||||||||||||||    
T  14044593 ttattgccattctttctaaacagag 14044617  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 235 - 316
Target Start/End: Original strand, 13930401 - 13930482
Alignment:
Q  235 aaagttgcaaacagagtgcaaaacaaattctacattaacgatagattcttacatgttgtgttaagttttactctcatgtata 316  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  13930401 aaagttgcaaacagagtgcaaaacaaattctacattaacgataggttcttacatgttgtgttaagttttactctcatgtata 13930482  T

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Target: chr6; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 14044249 - 14044329
Alignment:
Q  14 gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagcggtggataacaagacagtctgtcacaaactaca 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  14044249 gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagatgtggataacaagacagtctgtcacaaactaca 14044329  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 415 - 510
Target Start/End: Original strand, 14020191 - 14020286
Alignment:
Q  415 ttggctgtctttatcgcttctaatgttgatgcggtagattcattacctgaagtctgcacttgagttttagacgaacctttgatagtaatgacagac 510  Q
    |||||||||||| ||| |||| |||||| || |||| |||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  14020191 ttggctgtctttgtcgattctcatgttgttgtggtatattcattacctgaagtatgcacttgagttttagatgaacctttgatagtaacgacagac 14020286  T

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Target: chr6; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 442 - 510
Target Start/End: Complemental strand, 13475905 - 13475837
Alignment:
Q  442 gatgcggtagattcattacctgaagtctgcacttgagttttagacgaacctttgatagtaatgacagac 510  Q
    |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||    
T  13475905 gatgtggtagattcattacctgaagtctgcacttgagttttagatgaacctttgatagtaatgatagac 13475837  T

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Target: chr6; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 14 - 92
Target Start/End: Original strand, 13930070 - 13930147
Alignment:
Q  14 gaaacagacggaggctacggcgccaccgcaaatagttcgtcacatagcggtggataacaagacagtctgtcacaaacta 92  Q
    |||||||||||||||  |||||||||  ||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  13930070 gaaacagacggaggcggcggcgccaca-caaatagttcgtcacatagcggtggataataagacagtctgtcacaaacta 13930147  T

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Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 259 - 300
Target Start/End: Original strand, 14044622 - 14044663
Alignment:
Q  259 aaattctacattaacgatagattcttacatgttgtgttaagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  14044622 aaattctacattaacgatagattcttacatgttgtgttaagt 14044663  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 13476342 - 13476292
Alignment:
Q  235 aaagttgcaaacagagtgcaaaacaaattctacattaacgatagattctta 285  Q
    ||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  13476342 aaagttgcagacagagtgcgaaaccaattctacattaacgatagattctta 13476292  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 116 - 173
Target Start/End: Original strand, 13930348 - 13930405
Alignment:
Q  116 aatctgcaatgaatgagttcctaatcttctactaacagagtgtgaaaaaatgccaagt 173  Q
    ||||||||||||||||| || |||||||| |||||||||| |||||||||||| ||||    
T  13930348 aatctgcaatgaatgagctcttaatcttccactaacagagagtgaaaaaatgcaaagt 13930405  T

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Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 13476285 - 13476233
Alignment:
Q  327 agatgactgtgaactttgaagatgtatcacggaagaagataaaaatgtattac 379  Q
    ||||||| || | ||||||||||||| ||||||| ||||||||||||||||||    
T  13476285 agatgacagtaatctttgaagatgtaccacggaaaaagataaaaatgtattac 13476233  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 457 - 510
Target Start/End: Original strand, 24786856 - 24786909
Alignment:
Q  457 ttacctgaagtctgcacttgagttttagacgaacctttgatagtaatgacagac 510  Q
    ||||||| ||||| |||||| |||||| | |||| |||||||||||||||||||    
T  24786856 ttacctgcagtctacacttgcgttttatatgaacatttgatagtaatgacagac 24786909  T

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