View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11068_high_6 (Length: 371)
Name: NF11068_high_6
Description: NF11068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11068_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 59 - 364
Target Start/End: Original strand, 31949609 - 31949916
Alignment:
| Q |
59 |
attacaatcagaagctatttggaaattggttatggatttctgtcatgatcaagatttgtcttgtgtattttctggtgagcggccacctctgtg--caacg |
156 |
Q |
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| T |
31949609 |
attacaatcagaagctatttggaaattggttatggatttctgtcatgatcaagatttgtcttgtgtattttctggtgagtggccacctctgtgtgcaacg |
31949708 |
T |
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| Q |
157 |
cccgtaagttgatggcaggaataaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaa |
256 |
Q |
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| T |
31949709 |
cccgtaagttgatggcaggaataaagatcaaacttggtgtcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaa |
31949808 |
T |
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| Q |
257 |
gacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattagcactgttgattatgtggggtc |
356 |
Q |
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| T |
31949809 |
gacaaaattgcctccatctataggcattggtgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattagcagtgttgattatgtggggtc |
31949908 |
T |
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| Q |
357 |
ctttgctt |
364 |
Q |
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|||||||| |
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| T |
31949909 |
ctttgctt |
31949916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 311
Target Start/End: Complemental strand, 29707581 - 29707501
Alignment:
| Q |
231 |
tgtgcacctccaatgttggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgattt |
311 |
Q |
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| T |
29707581 |
tgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcactggaggaaatggtccatcttatcaattt |
29707501 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 114 - 335
Target Start/End: Complemental strand, 27510248 - 27510027
Alignment:
| Q |
114 |
ttgtcttgtgtattttctggtgagcggccacctctgtgcaacgcccgtaagttgatggcaggaataaagatcaaacttggtttcacgggagcagatagca |
213 |
Q |
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| T |
27510248 |
ttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcgtaagttgattgaaggagcaaagatcaaattaggtgtcacgggagcagctaaca |
27510149 |
T |
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| Q |
214 |
ataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatctataggcattggcgaaaatggtccgtcttatcgatttga |
313 |
Q |
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| T |
27510148 |
atagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctgcaagcattggagaaaatggtccatcttatcaatttaa |
27510049 |
T |
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| Q |
314 |
gcagcttttctgaaagaattag |
335 |
Q |
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| T |
27510048 |
gcagtatttctggaagaattag |
27510027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 77 - 335
Target Start/End: Original strand, 27271113 - 27271379
Alignment:
| Q |
77 |
ttggaaattggttatggatttctgtcatgatcaagatttgtcttgtgtattttctggtgagcggccacctctgtgcaacgcccgtaagttgatggcagga |
176 |
Q |
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| T |
27271113 |
ttggaagttgtttatggaattctgtcataatgaacagctgtcatgtgatttttctggtgaatggcaaacattgtgcaacgcgcgtaagttgattgaagga |
27271212 |
T |
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| Q |
177 |
ataaagatcaaacttggtttcacgggagcagatagcaat--------aaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcc |
268 |
Q |
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| T |
27271213 |
gcaaatatcaaattaggtgtcacgggagcagctaacaatggggacatagggttgtctatcattgtgcgcctccaatgttggtgttgagaacaaaaatgcc |
27271312 |
T |
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| Q |
269 |
tccatctataggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattag |
335 |
Q |
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| T |
27271313 |
tccatcagcaagcactggaggaaatggtccatcttatcaatttaagcactatttctggaagaattag |
27271379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 71; Significance: 4e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 77 - 335
Target Start/End: Original strand, 39210648 - 39210906
Alignment:
| Q |
77 |
ttggaaattggttatggatttctgtcatgatcaagatttgtcttgtgtattttctggtgagcggccacctctgtgcaacgcccgtaagttgatggcagga |
176 |
Q |
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| T |
39210648 |
ttggaagttgtttacggatttttgtcatgatgaacggttgtcatgtgttttttctggtgaatggcaagcattgtgcagcgcgcataagttgattgaagga |
39210747 |
T |
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| Q |
177 |
ataaagatcaaacttggtttcacgggagcagatagcaataaggttgtgtatctatgtgcacctccaatgttggtgttgaagacaaaattgcctccatcta |
276 |
Q |
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| T |
39210748 |
gcaaagatcaaattaggtgtcacaggagcagctaacaatagggttgtctatctttgtgcgcctccaatgttggtgctgagaacaaaaatgcctccatctg |
39210847 |
T |
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| Q |
277 |
taggcattggcgaaaatggtccgtcttatcgatttgagcagcttttctgaaagaattag |
335 |
Q |
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| T |
39210848 |
caagcattggagaaaatggtccatcttatcaatttaagcagtatttctggaagaattag |
39210906 |
T |
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