View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11068_high_8 (Length: 346)
Name: NF11068_high_8
Description: NF11068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11068_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 54013120 - 54012782
Alignment:
| Q |
1 |
aaatttttggtggaccaattgagttcatattgctagaagcctattaaatttcccctgcatgatttatctacctttcatccttttgtgttgaactggcaag |
100 |
Q |
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| T |
54013120 |
aaatttttggtggaccaattgagttcatattgctagaagcctattaaatttcccctgcatgatttatctacctttcatccttttgtgttgaactggcaag |
54013021 |
T |
|
| Q |
101 |
acagaagaaaatcattagaaatgagcatgcatttatctatatagtggtccaaccaatgtgtattgattcatgtctttttctatgctatgcagatatcaca |
200 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54013020 |
acagaagaaaatcattagaaatgagcctgcatttatctatatagtggtccaaccaatgtgtattgattcatgtctttttctatgctatgcagatatcaca |
54012921 |
T |
|
| Q |
201 |
atcttcaccacactgaaaaggacaccaatttctgcctctttatgcctctctttgacgcattaggcaatactcttaacaaaaattcatggacattacacga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54012920 |
atcttcaccacactgaaaaggacaccaatttctgcctctttatgcctctctttgacgcattaggcaatactcttaacaaaaattcatggacattacacga |
54012821 |
T |
|
| Q |
301 |
aacattaagttcaggttcaggtaattaacttgtcctatg |
339 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
54012820 |
aacattaagttcaggttcaggtaattaacttgtcctatg |
54012782 |
T |
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