View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11068_low_12 (Length: 260)

Name: NF11068_low_12
Description: NF11068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11068_low_12
NF11068_low_12
[»] chr1 (9 HSPs)
chr1 (1-238)||(50391910-50392147)
chr1 (92-206)||(11199914-11200030)
chr1 (142-206)||(43834538-43834602)
chr1 (130-205)||(52551269-52551344)
chr1 (170-212)||(39030152-39030194)
chr1 (165-213)||(6356867-6356916)
chr1 (147-211)||(4392238-4392302)
chr1 (134-206)||(11766028-11766100)
chr1 (129-205)||(38637540-38637616)
[»] chr5 (6 HSPs)
chr5 (134-204)||(27856164-27856234)
chr5 (129-212)||(28296072-28296155)
chr5 (142-189)||(18415618-18415665)
chr5 (128-204)||(15159178-15159254)
chr5 (134-204)||(21488819-21488889)
chr5 (140-204)||(33244869-33244933)
[»] chr8 (5 HSPs)
chr8 (165-214)||(19263309-19263358)
chr8 (171-214)||(38291857-38291900)
chr8 (141-206)||(5073024-5073089)
chr8 (132-181)||(2372874-2372923)
chr8 (129-194)||(1418035-1418100)
[»] chr7 (6 HSPs)
chr7 (139-224)||(38116719-38116804)
chr7 (146-214)||(27938807-27938875)
chr7 (139-202)||(25078144-25078207)
chr7 (141-212)||(45100226-45100297)
chr7 (129-206)||(33730103-33730180)
chr7 (165-206)||(6677091-6677132)
[»] chr3 (10 HSPs)
chr3 (165-214)||(50435-50484)
chr3 (145-206)||(42059846-42059907)
chr3 (147-206)||(43978626-43978685)
chr3 (151-204)||(43407680-43407733)
chr3 (140-204)||(37626642-37626706)
chr3 (165-212)||(15863149-15863196)
chr3 (134-176)||(28979035-28979077)
chr3 (150-211)||(23161955-23162016)
chr3 (143-203)||(46954880-46954940)
chr3 (143-211)||(51677343-51677411)
[»] chr2 (7 HSPs)
chr2 (142-211)||(19548187-19548256)
chr2 (142-225)||(8252621-8252704)
chr2 (142-206)||(10066574-10066638)
chr2 (142-214)||(34217580-34217652)
chr2 (140-191)||(40732555-40732606)
chr2 (171-214)||(6467003-6467046)
chr2 (165-214)||(20444184-20444233)
[»] scaffold1743 (1 HSPs)
scaffold1743 (165-214)||(193-242)
[»] chr6 (3 HSPs)
chr6 (143-212)||(14221276-14221345)
chr6 (141-198)||(28940816-28940873)
chr6 (140-189)||(33424561-33424610)
[»] chr4 (6 HSPs)
chr4 (165-214)||(22681170-22681219)
chr4 (142-212)||(11307624-11307694)
chr4 (142-212)||(26986701-26986771)
chr4 (143-203)||(21748248-21748308)
chr4 (171-214)||(42756772-42756815)
chr4 (150-212)||(20090557-20090619)
[»] scaffold0548 (1 HSPs)
scaffold0548 (141-212)||(4113-4184)
[»] scaffold0039 (1 HSPs)
scaffold0039 (141-212)||(29063-29136)


Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 50392147 - 50391910
Alignment:
Q  1 aagaggatgataatatcttaaaaggtatgcattagagaatccatggtggatattatatgattctaatatcacgttgagaactctggtaaaatgttggatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392147 aagaggatgataatatcttaaaaggtatgcattagagaatccatggtggatattatatgattctaatatcacgttgagaactctggtaaaatgttggatt 50392048  T
Q  101 ttaagtatgagtgtttagtcgcacattgctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatgg 200  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50392047 ttaagtatgagtggttagtcgcacattgctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatgg 50391948  T
Q  201 agatgtcgtgtcaacctctattatgcttcgggaatatt 238  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  50391947 agatgtcgtgtcaacctctattatgctccgggaatatt 50391910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 92 - 206
Target Start/End: Original strand, 11199914 - 11200030
Alignment:
Q  92 tgttggattttaagtatgagtgttta-gtcgcacattgc-tataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaag 189  Q
    |||||| |||||||| |||||| ||| ||| |||||||| ||| |||  |||||||||||||||||||||| | ||||||||||| ||||||| ||||||    
T  11199914 tgttgggttttaagtgtgagtggttaagtctcacattgcctatgaataggtaaaatgttggatatataagagaggtgactcatatgcctaatgccttaag 11200013  T
Q  190 gttttggatggagatgt 206  Q
    ||||||| |||||||||    
T  11200014 gttttgggtggagatgt 11200030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 43834538 - 43834602
Alignment:
Q  142 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 206  Q
    |||||||| |||||||||| | | ||| ||||||||||||||||||||||||| |||||||||||    
T  43834538 aaatgttgaatatataagagaggggacccatatacctaatgtcttaaggtttttgatggagatgt 43834602  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 130 - 205
Target Start/End: Original strand, 52551269 - 52551344
Alignment:
Q  130 tataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatg 205  Q
    ||||||||||||||||||| ||||||| ||| ||||||| |||||| |||||| ||| || |||| |||| |||||    
T  52551269 tataaatgtgtaaaatgttagatatatgagagatgtgacacatatatctaatgccttgagattttagatgaagatg 52551344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 212
Target Start/End: Original strand, 39030152 - 39030194
Alignment:
Q  170 catatacctaatgtcttaaggttttggatggagatgtcgtgtc 212  Q
    ||||||||||||||||||||||||| | ||||||||| |||||    
T  39030152 catatacctaatgtcttaaggttttaggtggagatgtggtgtc 39030194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 6356916 - 6356867
Alignment:
Q  165 tgactcatatacctaatgtctt-aaggttttggatggagatgtcgtgtca 213  Q
    |||||||||||||| ||||||| |||||||||| ||||||||| ||||||    
T  6356916 tgactcatatacctcatgtcttaaaggttttgggtggagatgtggtgtca 6356867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 211
Target Start/End: Complemental strand, 4392302 - 4392238
Alignment:
Q  147 ttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 211  Q
    |||||||||||| | | | ||| ||||||||| ||| |||||| |||||||||||||||| ||||    
T  4392302 ttggatatataacagaggagacccatatacctgatgccttaagattttggatggagatgtggtgt 4392238  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 206
Target Start/End: Complemental strand, 11766100 - 11766028
Alignment:
Q  134 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 206  Q
    |||| |||||||||||||| ||||||| |  ||||  ||  |||||||| ||||||||||||| |||||||||    
T  11766100 aatgggtaaaatgttggatttataagagagttgacctattaacctaatgccttaaggttttgggtggagatgt 11766028  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 38637540 - 38637616
Alignment:
Q  129 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatg 205  Q
    |||||||||  |||||||||||  |||||||  | |||||  |||||||||||| |||||||| |||| ||||||||    
T  38637540 ctataaatggataaaatgttggccatataagtgaggtgacctatatacctaatgccttaaggtattgggtggagatg 38637616  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Original strand, 27856164 - 27856234
Alignment:
Q  134 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 204  Q
    |||| |||||||||||||||||||||| | ||| ||||||||||||||| ||||| ||||||| |||||||    
T  27856164 aatgggtaaaatgttggatatataagagaggtggctcatatacctaatgccttaaagttttgggtggagat 27856234  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 129 - 212
Target Start/End: Complemental strand, 28296155 - 28296072
Alignment:
Q  129 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 212  Q
    |||| |||| ||||||| ||| || ||||||| | ||||| |||||||||||| |||||||||||||| ||||||||| |||||    
T  28296155 ctatgaatgagtaaaatattgaatgtataagagaggtgacccatatacctaatctcttaaggttttgggtggagatgtggtgtc 28296072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 142 - 189
Target Start/End: Complemental strand, 18415665 - 18415618
Alignment:
Q  142 aaatgttggatatataagatatgtgactcatatacctaatgtcttaag 189  Q
    ||||||||||||||||||||| | |||||||| |||||||||||||||    
T  18415665 aaatgttggatatataagataggagactcataaacctaatgtcttaag 18415618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 128 - 204
Target Start/End: Complemental strand, 15159254 - 15159178
Alignment:
Q  128 gctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 204  Q
    ||||||||||  |||||||||  || ||||||| |||||||||||||| ||||||| || | ||||||| |||||||    
T  15159254 gctataaatggataaaatgttacatgtataagagatgtgactcatatatctaatgttttgaagttttgggtggagat 15159178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 204
Target Start/End: Complemental strand, 21488889 - 21488819
Alignment:
Q  134 aatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 204  Q
    |||| |||||||||||||||||||||| ||||||| | || || | |||||||||| |||| | |||||||    
T  21488889 aatgagtaaaatgttggatatataagagatgtgacccttaaacttgatgtcttaagatttttggtggagat 21488819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 33244869 - 33244933
Alignment:
Q  140 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 204  Q
    |||||||||||||||||||||||||||| || ||||  ||||   |||| ||||||||| |||||    
T  33244869 taaaatgttggatatataagatatgtgaatcgtatatttaatacattaaagttttggatagagat 33244933  T

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Target: chr8 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 19263358 - 19263309
Alignment:
Q  165 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 214  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  19263358 tgactcatatacctaatgtcttaaggtttaggatggagatgtggtgtcaa 19263309  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 38291857 - 38291900
Alignment:
Q  171 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 214  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  38291857 atatacctaatgtcttaaggttttggatgaagatgtcgtgtcaa 38291900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 5073024 - 5073089
Alignment:
Q  141 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 206  Q
    |||||||||||||||||||| | | | ||||||||| ||||| ||||||||||||| |||||||||    
T  5073024 aaaatgttggatatataagagaggcgtctcatatacgtaatgccttaaggttttgggtggagatgt 5073089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 181
Target Start/End: Original strand, 2372874 - 2372923
Alignment:
Q  132 taaatgtgtaaaatgttggatatataagatatgtgactcatatacctaat 181  Q
    |||||| ||| | |||||||||||||||||||||||||||||||| ||||    
T  2372874 taaatgggtatattgttggatatataagatatgtgactcatatacataat 2372923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 129 - 194
Target Start/End: Complemental strand, 1418100 - 1418035
Alignment:
Q  129 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggtttt 194  Q
    |||| |||| ||||||| ||||||||||||||||| ||| ||||||| | ||||| |||| |||||    
T  1418100 ctatgaatgagtaaaatattggatatataagatatttgattcatatatcaaatgttttaaagtttt 1418035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 224
Target Start/End: Complemental strand, 38116804 - 38116719
Alignment:
Q  139 gtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaacctctattat 224  Q
    ||||||| |||| ||||||||||||||||| | ||||| ||| |||||||||||||||||| |||||| || ||| ||||| ||||    
T  38116804 gtaaaatattggctatataagatatgtgacacgtatacataacgtcttaaggttttggatgaagatgtggtttcatcctctcttat 38116719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 214
Target Start/End: Original strand, 27938807 - 27938875
Alignment:
Q  146 gttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 214  Q
    ||||||||||||||| | | ||||||||||||||| | |||||||||||||||| |||||| |||||||    
T  27938807 gttggatatataagaaaggagactcatatacctaaagccttaaggttttggatgtagatgtggtgtcaa 27938875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 202
Target Start/End: Original strand, 25078144 - 25078207
Alignment:
Q  139 gtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggag 202  Q
    |||||||| | ||||||||||| |||||| |||||||| ||||||||||||||||||| |||||    
T  25078144 gtaaaatgatcgatatataagagatgtgattcatatacataatgtcttaaggttttgggtggag 25078207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 45100226 - 45100297
Alignment:
Q  141 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 212  Q
    ||||||||| |||||||||| |  ||||||||||| |||||||||||| ||||| ||||||||||| |||||    
T  45100226 aaaatgttgaatatataagagagatgactcatataactaatgtcttaaagttttagatggagatgtggtgtc 45100297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 129 - 206
Target Start/End: Complemental strand, 33730180 - 33730103
Alignment:
Q  129 ctataaatgtgtaaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 206  Q
    |||| |||| || |||||||||||||| |||| | ||||| |||| | ||||||  ||||||||||||||||||||||    
T  33730180 ctatgaatgggttaaatgttggatataaaagagaggtgacccatagagctaatgcattaaggttttggatggagatgt 33730103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 206
Target Start/End: Complemental strand, 6677132 - 6677091
Alignment:
Q  165 tgactcatatacctaatgtcttaaggttttggatggagatgt 206  Q
    ||||||||||||| |||||||||||||||| |||| ||||||    
T  6677132 tgactcatataccaaatgtcttaaggttttagatgaagatgt 6677091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 50435 - 50484
Alignment:
Q  165 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 214  Q
    ||||||||||||||||||||||||||||| |||||||||||| |||||||    
T  50435 tgactcatatacctaatgtcttaaggtttgggatggagatgtggtgtcaa 50484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 206
Target Start/End: Complemental strand, 42059907 - 42059846
Alignment:
Q  145 tgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 206  Q
    |||| ||||||||||| | | ||| | |||||||||||||||||||||||||||||||||||    
T  42059907 tgtttgatatataagagaggggacacttatacctaatgtcttaaggttttggatggagatgt 42059846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 43978685 - 43978626
Alignment:
Q  147 ttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 206  Q
    |||||||||||||| | | |||||||||||||| || ||||||||||||| |||||||||    
T  43978685 ttggatatataagagaggagactcatatacctattgccttaaggttttgggtggagatgt 43978626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 204
Target Start/End: Original strand, 43407680 - 43407733
Alignment:
Q  151 atatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 204  Q
    |||||||||| | ||||||||||||||||||| | ||||||||||| |||||||    
T  43407680 atatataagaaaggtgactcatatacctaatgacgtaaggttttgggtggagat 43407733  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 204
Target Start/End: Original strand, 37626642 - 37626706
Alignment:
Q  140 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagat 204  Q
    ||||||||||||||||||||| | || |  |||||||||||||||||||| |||| | |||||||    
T  37626642 taaaatgttggatatataagagaggtcatacatatacctaatgtcttaagattttaggtggagat 37626706  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 165 - 212
Target Start/End: Original strand, 15863149 - 15863196
Alignment:
Q  165 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 212  Q
    |||||| ||||| |||||||||||||||||| ||||||| ||||||||    
T  15863149 tgactcgtatacttaatgtcttaaggttttgaatggagacgtcgtgtc 15863196  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 28979035 - 28979077
Alignment:
Q  134 aatgtgtaaaatgttggatatataagatatgtgactcatatac 176  Q
    |||||||||||| |||||||||||||| | |||||||||||||    
T  28979035 aatgtgtaaaatattggatatataagagaggtgactcatatac 28979077  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 150 - 211
Target Start/End: Original strand, 23161955 - 23162016
Alignment:
Q  150 gatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 211  Q
    ||||||||||| | ||||||||||||||  ||| |||||| |||||| ||||||||| ||||    
T  23161955 gatatataagagaggtgactcatatacccgatgccttaagattttgggtggagatgtggtgt 23162016  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 203
Target Start/End: Complemental strand, 46954940 - 46954880
Alignment:
Q  143 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggaga 203  Q
    |||||| |||||||||||||||| |||||||||| ||| || |||| ||||| || |||||    
T  46954940 aatgtttgatatataagatatgtaactcatatacttaacgttttaaagttttagaaggaga 46954880  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 211
Target Start/End: Original strand, 51677343 - 51677411
Alignment:
Q  143 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 211  Q
    ||||||||||||| || | |  ||||||||||||||||||||||   ||||||| ||||||||| ||||    
T  51677343 aatgttggatatagaaaagagatgactcatatacctaatgtcttggagttttgggtggagatgtggtgt 51677411  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 19548187 - 19548256
Alignment:
Q  142 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgt 211  Q
    ||||||||||||||||||| | | ||| |||||| |||||||||||||||||||| ||||||||| ||||    
T  19548187 aaatgttggatatataagagaggagacccatatatctaatgtcttaaggttttgggtggagatgtggtgt 19548256  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 142 - 225
Target Start/End: Complemental strand, 8252704 - 8252621
Alignment:
Q  142 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaacctctattatg 225  Q
    ||||||||||||||||||| | || |||| ||||||||| | ||||| ||||||||||||||||| |||||  ||||| |||||    
T  8252704 aaatgttggatatataagagaggtaactcgtatacctaacgccttaaagttttggatggagatgtggtgtcgccctctcttatg 8252621  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 10066574 - 10066638
Alignment:
Q  142 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgt 206  Q
    ||||||||||||||||||||| | ||  ||||||||||||| |||||| |||||| |||||||||    
T  10066574 aaatgttggatatataagataggagatccatatacctaatgccttaagattttgggtggagatgt 10066638  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 142 - 214
Target Start/End: Original strand, 34217580 - 34217652
Alignment:
Q  142 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 214  Q
    ||||| ||||||||||||||| |||||| ||||||||||   ||||||||||||||  ||||||| |||||||    
T  34217580 aaatggtggatatataagataggtgacttatatacctaactccttaaggttttggaatgagatgtggtgtcaa 34217652  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 191
Target Start/End: Complemental strand, 40732606 - 40732555
Alignment:
Q  140 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggt 191  Q
    ||||||||| ||||||||||||| ||| || |||||||||||||||||||||    
T  40732606 taaaatgtttgatatataagataagtggcttatatacctaatgtcttaaggt 40732555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 6467003 - 6467046
Alignment:
Q  171 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 214  Q
    ||||| ||||||||||||| |||||||||||||||| |||||||    
T  6467003 atataactaatgtcttaagtttttggatggagatgtggtgtcaa 6467046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 165 - 214
Target Start/End: Original strand, 20444184 - 20444233
Alignment:
Q  165 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 214  Q
    |||||||||||||||||| |||||||||| ||||| |||| | |||||||    
T  20444184 tgactcatatacctaatgccttaaggtttaggatgaagatatggtgtcaa 20444233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1743 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1743
Description:

Target: scaffold1743; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 242 - 193
Alignment:
Q  165 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 214  Q
    ||||||||||| ||||||||||||||||| |||||||||||| |||||||    
T  242 tgactcatatatctaatgtcttaaggtttaggatggagatgtggtgtcaa 193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 143 - 212
Target Start/End: Original strand, 14221276 - 14221345
Alignment:
Q  143 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 212  Q
    |||||||||| ||||||| | |||||||||  | ||||||| |||||||||||||||||||||| |||||    
T  14221276 aatgttggatttataagagaggtgactcattaatctaatgtattaaggttttggatggagatgtggtgtc 14221345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 28940873 - 28940816
Alignment:
Q  141 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggat 198  Q
    ||||||||||| |||||||| | | ||||| |||||||||||||||||| ||||||||    
T  28940873 aaaatgttggacatataagagaagagactcgtatacctaatgtcttaagattttggat 28940816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 140 - 189
Target Start/End: Complemental strand, 33424610 - 33424561
Alignment:
Q  140 taaaatgttggatatataagatatgtgactcatatacctaatgtcttaag 189  Q
    ||||||| | ||||||||||| |||||||||||||||| |||||||||||    
T  33424610 taaaatgatagatatataagagatgtgactcatataccaaatgtcttaag 33424561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 165 - 214
Target Start/End: Complemental strand, 22681219 - 22681170
Alignment:
Q  165 tgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 214  Q
    ||||||||||||||||||||||||||||| || ||||||||| |||||||    
T  22681219 tgactcatatacctaatgtcttaaggtttagggtggagatgtggtgtcaa 22681170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 11307694 - 11307624
Alignment:
Q  142 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 212  Q
    ||||||||||||||| ||| | | ||| ||||||||| ||||||||| ||||||| ||||||||| |||||    
T  11307694 aaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtc 11307624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 142 - 212
Target Start/End: Complemental strand, 26986771 - 26986701
Alignment:
Q  142 aaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 212  Q
    |||||||| |||||| ||| |  |||| ||||||| ||||| ||||||||||||||||||||||| |||||    
T  26986771 aaatgttgtatatattagaaaaatgacccatatacataatgccttaaggttttggatggagatgtggtgtc 26986701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 21748248 - 21748308
Alignment:
Q  143 aatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggaga 203  Q
    ||||||| |||||||| | | ||||||||||| |||||||||||||  |||||||||||||    
T  21748248 aatgttgaatatataaaagacgtgactcatatgcctaatgtcttaaaattttggatggaga 21748308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 42756815 - 42756772
Alignment:
Q  171 atatacctaatgtcttaaggttttggatggagatgtcgtgtcaa 214  Q
    |||||||||| |||||||||||||||||| |||||| |||||||    
T  42756815 atatacctaaagtcttaaggttttggatgaagatgtggtgtcaa 42756772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 20090619 - 20090557
Alignment:
Q  150 gatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 212  Q
    ||||||||||| | |||||| ||||||||||||  ||| |||||||||||| || ||||||||    
T  20090619 gatatataagagaggtgacttatatacctaatgcattagggttttggatggcgacgtcgtgtc 20090557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Complemental strand, 4184 - 4113
Alignment:
Q  141 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 212  Q
    |||||||||||||||| ||| | | ||| ||||||||| ||||||||| ||||||| ||||||||| |||||    
T  4184 aaaatgttggatatatgagagaggggacacatatacctcatgtcttaatgttttgggtggagatgtggtgtc 4113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 212
Target Start/End: Original strand, 29063 - 29136
Alignment:
Q  141 aaaatgttgg--atatataagatatgtgactcatatacctaatgtcttaaggttttggatggagatgtcgtgtc 212  Q
    ||||||||||  |||||||||| | | |||||||||| || |||||||||| |||||| ||||||||| |||||    
T  29063 aaaatgttggatatatataagagaggggactcatatatctgatgtcttaagattttgggtggagatgtggtgtc 29136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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