View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11068_low_14 (Length: 248)
Name: NF11068_low_14
Description: NF11068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11068_low_14 |
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| [»] scaffold0570 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 48537226 - 48537468
Alignment:
| Q |
1 |
ctgatacaagctccaagaccagccctattacacgaagtggagaaagctgcatccacattgcatttgaacctccctacaaccggttttgtccaccgagtga |
100 |
Q |
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| T |
48537226 |
ctgatacaagctccaagaccagccctattacatgaagtggagaaagttgcatccacattgcatttgaacctccctacagccggttttgtccaccgagtga |
48537325 |
T |
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| Q |
101 |
tatcatgttggacacttgtaacttggctgcatggcgtaattttctgtgcacttttccaactattcagaaaagcctcggccctctcactgatttgctgatt |
200 |
Q |
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| T |
48537326 |
tatcatgctggacactggtaacttggctgcatggcgtaattttctgtgcatttttccaactattcagaaaagcctcggccctctcactgatttgctgagt |
48537425 |
T |
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| Q |
201 |
cgtttccgccacattgttccaaactttgttatgtctctgcttc |
243 |
Q |
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| T |
48537426 |
cgtttccaccacattgttccaaactttgttatttctctgcttc |
48537468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 92
Target Start/End: Original strand, 51899782 - 51899870
Alignment:
| Q |
4 |
atacaagctccaagaccagccctattacacgaagtggagaaagctgcatccacattgcatttgaacctccctacaaccggttttgtcca |
92 |
Q |
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| T |
51899782 |
atacaagctgcaagaccaacccggttaagtgaagttgagaatgctgcatccacattacatttaaatctccctaacaccggttttgtcca |
51899870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 48207288 - 48207057
Alignment:
| Q |
1 |
ctgatacaagctccaagaccagccctattacacgaagtggagaaagctgcatccacattgcatttgaacctccctacaaccggttttgtccaccgagtga |
100 |
Q |
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| T |
48207288 |
ctgatacaagctgcaagaccaacccggttaagtgaagttgagaatgttgcatccacattacatttaaatctccctaacaccggttttgtccagc-aggga |
48207190 |
T |
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| Q |
101 |
ta-tcatgttggacacttgtaacttggctgcatggcgtaattttctgtgcacttttccaactattcagaaaagcctcggccctctcactgatttgctgat |
199 |
Q |
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| T |
48207189 |
gagtcatgttgcacgctaggaacttggatgtgtggctgtattttttgtgcactcttccagctattcaaaaacgcttcagccctctcacttatttgttgat |
48207090 |
T |
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| Q |
200 |
tcgtttccgccacattgttccaaactttgttat |
232 |
Q |
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| T |
48207089 |
aagtttccacaacgttgttccataccttgttat |
48207057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0570 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0570
Description:
Target: scaffold0570; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 5264 - 5456
Alignment:
| Q |
40 |
gagaaagctgcatccacattgcatttgaacctccctacaaccggttttgtcc-accgagtgatatcatgttggacacttgtaacttggctgcatggcgta |
138 |
Q |
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| T |
5264 |
gagaaagctgcatccacattacatttaaatctccctagcaccggttttgtccaacagggggat-tcatgttgcacgctaggaacttggatacgtggctgt |
5362 |
T |
|
| Q |
139 |
attttctgtgcacttttccaactattcagaaaagcctcggccctctcactgatttgctgattcgtttccgccacattgttccaaactttgttat |
232 |
Q |
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| T |
5363 |
attttttgtgcactcttccaactgttcaaaaacgcttcagccctctcactaatttgttgagaagtttccacaacgttgttccataccttgttat |
5456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 33737887 - 33738079
Alignment:
| Q |
40 |
gagaaagctgcatccacattgcatttgaacctccctacaaccggttttgtcc-accgagtgatatcatgttggacacttgtaacttggctgcatggcgta |
138 |
Q |
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|||||||||||||||||||| ||||| || ||||||| ||||||||||||| || | | ||| |||||||| || || | ||||||| | | |||| |
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| T |
33737887 |
gagaaagctgcatccacattacatttaaatctccctagcaccggttttgtccaacagggggat-tcatgttgcacgctaggaacttggatacgtggctgt |
33737985 |
T |
|
| Q |
139 |
attttctgtgcacttttccaactattcagaaaagcctcggccctctcactgatttgctgattcgtttccgccacattgttccaaactttgttat |
232 |
Q |
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| T |
33737986 |
attttttgtgcactcttccaactgttcaaaaacgcttcagccctctcactaatttgttgagaagtttccacaacgttgttccataccttgttat |
33738079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 230
Target Start/End: Complemental strand, 14585468 - 14585390
Alignment:
| Q |
152 |
ttttccaactattcagaaaagcctcggccctctcactgatttgctgattcgtttccgccacattgttccaaactttgtt |
230 |
Q |
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||||||| || ||||||||||| || ||||||||||| ||||| ||| | |||||| | ||||||||||| |||||||| |
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| T |
14585468 |
ttttccagctgttcagaaaagcttcagccctctcactaatttgttgaattgtttccacaacattgttccacactttgtt |
14585390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 40 - 232
Target Start/End: Original strand, 36481188 - 36481380
Alignment:
| Q |
40 |
gagaaagctgcatccacattgcatttgaacctccctacaaccggttttgtcc-accgagtgatatcatgttggacacttgtaacttggctgcatggcgta |
138 |
Q |
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|||||||||||||||||||| ||||| || ||||||| ||||||||||||| || | | ||| |||||||| | || | ||||||| | | |||| |
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| T |
36481188 |
gagaaagctgcatccacattacatttaaatctccctagcaccggttttgtccaacagggggat-tcatgttgcatgctaggaacttggatacgtggctgt |
36481286 |
T |
|
| Q |
139 |
attttctgtgcacttttccaactattcagaaaagcctcggccctctcactgatttgctgattcgtttccgccacattgttccaaactttgttat |
232 |
Q |
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| T |
36481287 |
attttttgtgcactcttccaactgttcaaaaacgcttcagccctctcactaatttgttgagaagtttccacaacgttgttccataccttgttat |
36481380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 92
Target Start/End: Complemental strand, 329966 - 329878
Alignment:
| Q |
4 |
atacaagctccaagaccagccctattacacgaagtggagaaagctgcatccacattgcatttgaacctccctacaaccggttttgtcca |
92 |
Q |
| |
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||||||||| |||||||| ||| ||| ||||| ||||| |||||||||||||| ||||| || ||||||| |||||||||||||| |
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| T |
329966 |
atacaagctgcaagaccaacccggttaagtgaagttgagaatgctgcatccacattacatttaaatctccctaacaccggttttgtcca |
329878 |
T |
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