View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11068_low_2 (Length: 618)

Name: NF11068_low_2
Description: NF11068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11068_low_2
NF11068_low_2
[»] chr8 (10 HSPs)
chr8 (371-614)||(27887325-27887569)
chr8 (371-614)||(27945983-27946227)
chr8 (371-614)||(28026226-28026470)
chr8 (380-614)||(27969312-27969544)
chr8 (222-353)||(40611095-40611226)
chr8 (382-437)||(27980830-27980885)
chr8 (382-437)||(28038132-28038187)
chr8 (509-550)||(16896186-16896227)
chr8 (59-148)||(40611300-40611389)
chr8 (381-429)||(38358368-38358416)
[»] chr4 (2 HSPs)
chr4 (190-359)||(16865104-16865273)
chr4 (57-152)||(16864971-16865066)
[»] chr6 (1 HSPs)
chr6 (183-359)||(5145328-5145501)
[»] chr5 (2 HSPs)
chr5 (225-310)||(20530758-20530843)
chr5 (27-124)||(20530561-20530658)
[»] chr3 (6 HSPs)
chr3 (192-353)||(20544066-20544227)
chr3 (381-437)||(54431720-54431776)
chr3 (57-148)||(20543931-20544022)
chr3 (511-550)||(54431712-54431751)
chr3 (509-550)||(52402026-52402067)
chr3 (381-437)||(52402034-52402090)
[»] chr7 (2 HSPs)
chr7 (182-310)||(3013443-3013571)
chr7 (69-152)||(3037642-3037725)


Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 371 - 614
Target Start/End: Complemental strand, 27887569 - 27887325
Alignment:
Q  371 tctttttgtcacacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagttaccag-tacagtttgacaaaagcataacaatgttc 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  27887569 tctttttgtcacacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagttacttggtacagtttgacaaaagcataacaatgttc 27887470  T
Q  470 ctctctccaaaagccaaaagccttagagggttcttttttcatcactaatattttaaaatgatttaccagttaccggttctgtttgacaaaagcataacaa 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27887469 ctctctccaaaagccaaaagccttagagggttcttttttcatcactaatattttaaaatgatttaccagttaccggttctgtttgacaaaagcataacaa 27887370  T
Q  570 ccacaatctgcaaaagccaaaagccttaaagggttcttctctctc 614  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  27887369 ccacaatctgcaaaagccaaaagccctaaagggttcttctctctc 27887325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 371 - 614
Target Start/End: Complemental strand, 27946227 - 27945983
Alignment:
Q  371 tctttttgtcacacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagttaccag-tacagtttgacaaaagcataacaatgttc 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  27946227 tctttttgtcacacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagttacttggtacagtttgacaaaagcataacaatgttc 27946128  T
Q  470 ctctctccaaaagccaaaagccttagagggttcttttttcatcactaatattttaaaatgatttaccagttaccggttctgtttgacaaaagcataacaa 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27946127 ctctctccaaaagccaaaagccttagagggttcttttttcatcactaatattttaaaatgatttaccagttaccggttctgtttgacaaaagcataacaa 27946028  T
Q  570 ccacaatctgcaaaagccaaaagccttaaagggttcttctctctc 614  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  27946027 ccacaatctgcaaaagccaaaagccctaaagggttcttctctctc 27945983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 371 - 614
Target Start/End: Complemental strand, 28026470 - 28026226
Alignment:
Q  371 tctttttgtcacacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagttaccag-tacagtttgacaaaagcataacaatgttc 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||||||||||||||    
T  28026470 tctttttgtcacacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagttacttggtacagtttgacaaaagcataacaatgttc 28026371  T
Q  470 ctctctccaaaagccaaaagccttagagggttcttttttcatcactaatattttaaaatgatttaccagttaccggttctgtttgacaaaagcataacaa 569  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28026370 ctctctccaaaagccaaaagccttagagggttcttttttcatcactaatattttaaaatgatttaccagttaccggttctgtttgacaaaagcataacaa 28026271  T
Q  570 ccacaatctgcaaaagccaaaagccttaaagggttcttctctctc 614  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  28026270 ccacaatctgcaaaagccaaaagccctaaagggttcttctctctc 28026226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 380 - 614
Target Start/End: Complemental strand, 27969544 - 27969312
Alignment:
Q  380 cacacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagttaccagtacagtttgacaaaagcataacaatg-ttcctctctcca 478  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||| ||   | |  | |||||||||||||||||||||| || |||||||||    
T  27969544 cacacactcacactcattggtccacgtcaccaatattttaaaatgatttgccggta--ctgc-ctgtttgacaaaagcataacaatggttactctctcca 27969448  T
Q  479 aaagccaaaagccttagagggttcttttttcatcactaatattttaaaatgatttaccagttaccggttctgtttgacaaaagcataacaaccacaatct 578  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27969447 aaagccaaaagccttaaagggttattttttcatcactaatattttaaaatgatttaccagttaccggttctgtttgacaaaagcataacaaccacaatct 27969348  T
Q  579 gcaaaagccaaaagccttaaagggttcttctctctc 614  Q
    ||||||||||||||||||||||||||||||||||||    
T  27969347 gcaaaagccaaaagccttaaagggttcttctctctc 27969312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 222 - 353
Target Start/End: Complemental strand, 40611226 - 40611095
Alignment:
Q  222 acatttgatgaagcatctaagatgaaggtctggagagaagctatgaagcaagaaatagagtatattgaaagcaataacacttgggaactcattgatttac 321  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||| || |  || ||||| || |||||||||||||| | ||||||||    
T  40611226 acatttgatgaagcatcaaagatgaaggtgtggagagaagctatgaaacaagaaattgactcaatagaaagtaacaacacttgggaacttactgatttac 40611127  T
Q  322 gtgctggtttcaagaagattggagttaaatgg 353  Q
      || |||| ||||||||| ||||||||||||    
T  40611126 cagcaggttgcaagaagataggagttaaatgg 40611095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 27980885 - 27980830
Alignment:
Q  382 cacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagttac 437  Q
    |||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  27980885 cacactttcacccattggtccacgtcaccaatattttaacatgatttaccagttac 27980830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 437
Target Start/End: Complemental strand, 28038187 - 28038132
Alignment:
Q  382 cacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagttac 437  Q
    |||||| |||| ||||||||||||||||||||||||||| ||||||| ||||||||    
T  28038187 cacactttcacccattggtccacgtcaccaatattttaacatgatttaccagttac 28038132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 509 - 550
Target Start/End: Complemental strand, 16896227 - 16896186
Alignment:
Q  509 catcactaatattttaaaatgatttaccagttaccggttctg 550  Q
    ||||||||| ||||||||||| ||||||||||||||||||||    
T  16896227 catcactaacattttaaaatgctttaccagttaccggttctg 16896186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 148
Target Start/End: Complemental strand, 40611389 - 40611300
Alignment:
Q  59 tcatgaagtagagatggagcttgagtcaactgatgaggttgagcttccccctagaacaagaaatccactaggtgagttagatgattatgt 148  Q
    |||||||| |||||| ||  |||||||| ||||||| ||||| ||| ||| ||||||||||||||||| |||| | ||| | ||||||||    
T  40611389 tcatgaagaagagatagatgttgagtcacctgatgaagttgaactttcccgtagaacaagaaatccaccaggttacttaaaagattatgt 40611300  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 429
Target Start/End: Original strand, 38358368 - 38358416
Alignment:
Q  381 acacactctcactcattggtccacgtcaccaatattttaaaatgatttg 429  Q
    ||||| |||||||| |||||||||||||  ||||||||||||| |||||    
T  38358368 acacattctcactcgttggtccacgtcattaatattttaaaataatttg 38358416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 190 - 359
Target Start/End: Original strand, 16865104 - 16865273
Alignment:
Q  190 tagctttattcagtacctcatctgatcctagcacatttgatgaagcatctaagatgaaggtctggagagaagctatgaagcaagaaatagagtatattga 289  Q
    ||||||| || |||||||||||||||||||| ||||||| ||||| ||| ||||||||||| | |||||||||||||||||| ||||| || | ||||||    
T  16865104 tagctttgtttagtacctcatctgatcctagtacatttgttgaagtatcaaagatgaaggtattgagagaagctatgaagcaggaaattgaatctattga 16865203  T
Q  290 aagcaataacacttgggaactcattgatttacgtgctggtttcaagaagattggagttaaatgggtatat 359  Q
    ||| || |||| ||||||||| | ||||||||  || |||| ||||||||| |||||||| ||| |||||    
T  16865204 aagtaacaacatttgggaacttactgatttaccagcaggttgcaagaagataggagttaagtggatatat 16865273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 57 - 152
Target Start/End: Original strand, 16864971 - 16865066
Alignment:
Q  57 gatcatgaagtagagatggagcttgagtcaactgatgaggttgagcttccccctagaacaagaaatccactaggtgagttagatgattatgtaact 152  Q
    ||||||||||||||||||||| |||||||| ||||||| ||||||||| |||||||||||| |||||||| |||| | ||  | ||||||||||||    
T  16864971 gatcatgaagtagagatggagattgagtcacctgatgaagttgagctttcccctagaacaataaatccaccaggttacttgaaagattatgtaact 16865066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 183 - 359
Target Start/End: Complemental strand, 5145501 - 5145328
Alignment:
Q  183 aatagcctagctttattcagtacctcatctgatcctagcacatttgatgaagcatctaagatgaaggtctggagagaagctatgaagcaagaaatagagt 282  Q
    ||||| |||| | ||||||| ||||||||||||||||  || | ||| ||||| |||||  ||||| | |||||||| || ||||| || |||||||| |    
T  5145501 aatagtctagttctattcagcacctcatctgatcctaatacttatgaggaagcttctaaactgaagatttggagagatgcaatgaaacatgaaatagaat 5145402  T
Q  283 atattgaaagcaataacacttgggaactcattgatttacgtgctggtttcaagaagattggagttaaatgggtatat 359  Q
      || ||||||||||||||||||||||||||||||||||   |||  | |||||| |||||||||||||||||||||    
T  5145401 ccatagaaagcaataacacttgggaactcattgatttac---ctgcatgcaagaaaattggagttaaatgggtatat 5145328  T

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Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 20530758 - 20530843
Alignment:
Q  225 tttgatgaagcatctaagatgaaggtctggagagaagctatgaagcaagaaatagagtatattgaaagcaataacacttgggaact 310  Q
    ||||| |||||||||||  ||||||| ||||||||||| ||||||||||||||||| |  ||||||||||||||||||||||||||    
T  20530758 tttgaggaagcatctaaagtgaaggtttggagagaagcaatgaagcaagaaatagactccattgaaagcaataacacttgggaact 20530843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 27 - 124
Target Start/End: Original strand, 20530561 - 20530658
Alignment:
Q  27 cttgaagatacaagtgaaaatgcttatttagatcatgaagtagagatggagcttgagtcaactgatgaggttgagcttccccctagaacaagaaatcc 124  Q
    |||||||||| |||||| |||| || |||||||||||||| ||||||||| |||||||||  ||||||    ||||||||||||||||||||||||||    
T  20530561 cttgaagatataagtgagaatgtttctttagatcatgaagaagagatggatcttgagtcatttgatgaatcagagcttccccctagaacaagaaatcc 20530658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 3e-19; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 192 - 353
Target Start/End: Original strand, 20544066 - 20544227
Alignment:
Q  192 gctttattcagtacctcatctgatcctagcacatttgatgaagcatctaagatgaaggtctggagagaagctatgaagcaagaaatagagtatattgaaa 291  Q
    ||||| |||| ||| |||||| |||| |  |||||||| |||||||| ||||||||| | | ||||||||||||||| |||||||| || |  || ||||    
T  20544066 gctttgttcaatacttcatctaatccaaatacatttgaggaagcatcaaagatgaagatgttgagagaagctatgaaacaagaaattgactcaatagaaa 20544165  T
Q  292 gcaataacacttgggaactcattgatttacgtgctggtttcaagaagattggagttaaatgg 353  Q
    |  | |||||||||||||| | ||||||||  || |||| ||||||||| ||||||||||||    
T  20544166 gttacaacacttgggaacttactgatttaccagcaggttgcaagaagataggagttaaatgg 20544227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 54431776 - 54431720
Alignment:
Q  381 acacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagttac 437  Q
    ||||||| ||||||||||||||||||||| |||||||||||||||||| || |||||    
T  54431776 acacactttcactcattggtccacgtcactaatattttaaaatgatttacctgttac 54431720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 57 - 148
Target Start/End: Original strand, 20543931 - 20544022
Alignment:
Q  57 gatcatgaagtagagatggagcttgagtcaactgatgaggttgagcttccccctagaacaagaaatccactaggtgagttagatgattatgt 148  Q
    |||||||||| |||||| ||  |||||||| | ||||| ||||| ||| ||||||||||||||||||||| |||| | ||| | ||||||||    
T  20543931 gatcatgaagaagagatagatgttgagtcaccagatgaagttgaactttcccctagaacaagaaatccaccaggttacttaaaagattatgt 20544022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 511 - 550
Target Start/End: Complemental strand, 54431751 - 54431712
Alignment:
Q  511 tcactaatattttaaaatgatttaccagttaccggttctg 550  Q
    |||||||||||||||||||||||||| ||||| |||||||    
T  54431751 tcactaatattttaaaatgatttacctgttactggttctg 54431712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 509 - 550
Target Start/End: Complemental strand, 52402067 - 52402026
Alignment:
Q  509 catcactaatattttaaaatgatttaccagttaccggttctg 550  Q
    ||||||||| ||||||||||| |||||||||||| |||||||    
T  52402067 catcactaacattttaaaatgctttaccagttacaggttctg 52402026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 381 - 437
Target Start/End: Complemental strand, 52402090 - 52402034
Alignment:
Q  381 acacactctcactcattggtccacgtcaccaatattttaaaatgatttgccagttac 437  Q
    |||||||| || |||||||||||| |||| || ||||||||||| ||| ||||||||    
T  52402090 acacactcccattcattggtccacatcactaacattttaaaatgctttaccagttac 52402034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 182 - 310
Target Start/End: Complemental strand, 3013571 - 3013443
Alignment:
Q  182 aaatagcctagctttattcagtacctcatctgatcctagcacatttgatgaagcatctaagatgaaggtctggagagaagctatgaagcaagaaatagag 281  Q
    |||||| |||||| |||||||||| | || |||||| |   | ||||| |||||||| ||  |||| || ||||||||||| |||||||| ||||||||     
T  3013571 aaatagtctagctctattcagtactttatatgatcccaatgcttttgaagaagcatccaaactgaaagtatggagagaagcaatgaagcaggaaatagat 3013472  T
Q  282 tatattgaaagcaataacacttgggaact 310  Q
    |  ||||||||||| ||||||||||||||    
T  3013471 tccattgaaagcaacaacacttgggaact 3013443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 69 - 152
Target Start/End: Original strand, 3037642 - 3037725
Alignment:
Q  69 gagatggagcttgagtcaactgatgaggttgagcttccccctagaacaagaaatccactaggtgagttagatgattatgtaact 152  Q
    |||||||||||||||||| || |||||  | ||||||||||||||||||||||||||| | || |  || ||||||||||||||    
T  3037642 gagatggagcttgagtcatctaatgagtctaagcttccccctagaacaagaaatccaccaagttacctatatgattatgtaact 3037725  T

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