View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11068_low_4 (Length: 417)
Name: NF11068_low_4
Description: NF11068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11068_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-168; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 387
Target Start/End: Complemental strand, 926499 - 926128
Alignment:
| Q |
23 |
gcagagacatgaagcaaccttgaaatccattacttcactttcttgcttgatcccaacttcgacctttcttccgtgcaacttccnnnnnnncatctccatg |
122 |
Q |
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| T |
926499 |
gcagagacatgaagcagccttgaaatccattacttcactttcttgcttgatcccaacttcgacctttcttccgtgcaacttcctttttttcatctccatg |
926400 |
T |
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| Q |
123 |
actttat----aaatagcctaaaaataaacacttgttgaatgcatccaaataaactcataaaagaaacacaagttatggaagaaacttttatttcctcca |
218 |
Q |
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| T |
926399 |
actttatttataaatagcctaaaaataaacacttgttgaatgcatccaaataaactcataaaagaaacacaagttatggaagaaacttttatttcctcca |
926300 |
T |
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| Q |
219 |
aaccatgtgccaaagaaga---gatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatgatgtaatggtgtggcatactga |
315 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
926299 |
aaccatgtgccaaagaagaagagatcatcgatttgaaccaaatcacactccgatcctttaatctttctgaccttgatgatgtaatggtgtggcagactga |
926200 |
T |
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| Q |
316 |
tgaaaaagtggccaagttctggggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatat |
387 |
Q |
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| T |
926199 |
tgaaaaagtggccaagttctggggggaaccttacaccagcaaagaccaaggcatcaacttcattgaaaatat |
926128 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 228 - 398
Target Start/End: Complemental strand, 935740 - 935570
Alignment:
| Q |
228 |
ccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatgatgtaatggtgtggcatactgatgaaaaagtggc |
327 |
Q |
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| T |
935740 |
ccaaagaagagatcattgatttgaaccaaatcacactccgatcttttaatctttctgacctcgatgatctcatggtgtggcacactgatgaaaaagtggc |
935641 |
T |
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| Q |
328 |
caagttctggggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagt |
398 |
Q |
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| T |
935640 |
caagttctggggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatatggcaggcaagt |
935570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 194 - 378
Target Start/End: Complemental strand, 928641 - 928454
Alignment:
| Q |
194 |
atggaagaaacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatg |
293 |
Q |
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| T |
928641 |
atggaggaaacttttatttcttcaaaaccatgtggcaaagaagaaatcattgatttgaaccaaatcacactccgatcctttaatctttctgaccttgatg |
928542 |
T |
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| Q |
294 |
atgtaatggtgtggcatactgatgaaaaagtggccaagttctg---gggggaaccttacaccagcaaagaccaaggcatcaacttcat |
378 |
Q |
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| T |
928541 |
atgtaatggtgtggcatactgatgaaaaggtggccaagttctgctcttgggaaccttacaccagcagagaagatggcatcaacttcat |
928454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 191 - 387
Target Start/End: Complemental strand, 939569 - 939370
Alignment:
| Q |
191 |
gttatggaagaaacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttg |
290 |
Q |
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|||||||| |||||||||||||| ||||||||| ||| ||| ||| | | ||| |||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
939569 |
gttatggaggaaacttttatttcttccaaaccaagtggcaatgaacaaagcattgatttgaaccaaatcacactccgaccttttcatctttctgaccttg |
939470 |
T |
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| Q |
291 |
atgatgtaatggtgtggcatactgatgaaaaagtggccaagttctg---gggggaaccttacaccagcaaagaccaaggcatcaacttcatcaaaaatat |
387 |
Q |
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| T |
939469 |
atgatctcatggtatggagaactgatgaaaaagtggccaagttctgctcttgggaaccatacaccagcaaagaacaaggcatcagcttcattgaaaatat |
939370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 202 - 336
Target Start/End: Complemental strand, 924278 - 924144
Alignment:
| Q |
202 |
aacttttatttcctccaaaccatgtgccaaagaagagatcatcgatttgaaccaaatcacactccgatcctttcatctttctgaccttgatgatgtaatg |
301 |
Q |
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||||| |||||| ||||||||| ||||||||||||||| || ||| | | |||||||||||||||| || || |||||||||||||||||||| | ||| |
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| T |
924278 |
aacttctatttcttccaaaccaggtgccaaagaagagagaattgatctaacccaaatcacactccgaccccttaatctttctgaccttgatgatctcatg |
924179 |
T |
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| Q |
302 |
gtgtggcatactgatgaaaaagtggccaagttctg |
336 |
Q |
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| T |
924178 |
atatggacaactgatgaaaaagtggccaagttctg |
924144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 277 - 332
Target Start/End: Complemental strand, 46648477 - 46648422
Alignment:
| Q |
277 |
tctttctgaccttgatgatgtaatggtgtggcatactgatgaaaaagtggccaagt |
332 |
Q |
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| T |
46648477 |
tctttctgatcttgatgatgttttggtgtggactagtgatgaaaaagtggccaagt |
46648422 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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