View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11068_low_5 (Length: 394)
Name: NF11068_low_5
Description: NF11068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11068_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 29 - 384
Target Start/End: Original strand, 14459014 - 14459371
Alignment:
| Q |
29 |
gtgataacacttttttacatgaaaa-tat-gtcacactattgtagcaggggagaggattcaaattcatctatgagtgatgtgttagtactgtttatgatt |
126 |
Q |
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| T |
14459014 |
gtgataacactttttcacatgaaaaatattgtcacactattgtagcaggggagaggattcaaattcatctatgagtgatgtgttagtactgtttatgatt |
14459113 |
T |
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| Q |
127 |
ttatgtaatgatgaaatgaaataggatatataaacttaggaataattcaatgcagtaaatacctcgaatattttattgcaccattcctcggactcattgt |
226 |
Q |
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| T |
14459114 |
ttatgtaatgatgaaatgaaataggatatataaacttaggaataattcaatgcagtaattacctcgaatattttattgcaccattcctcggactcattgt |
14459213 |
T |
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| Q |
227 |
tgagtaaatgacgcaaaatttgttgatgatgtgttggttctgacataagttttcccttaccttcattatcttttattgctttcttatatgcatgccacct |
326 |
Q |
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| T |
14459214 |
tgagtaaatgacgcaaaatttgttgatgatgtgttggttctgacataagttttcccttaccttcattatcttttattgctttcttatatgcatgccacct |
14459313 |
T |
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| Q |
327 |
tatatgattctctgacttgtagaattttgcatagtagaaaaattgtacttcacctatg |
384 |
Q |
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| T |
14459314 |
tatatgattctctgacttgtagaattttgcatagtagaaaaattgtacttcacctatg |
14459371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 18 - 90
Target Start/End: Original strand, 14467984 - 14468059
Alignment:
| Q |
18 |
aatattgatgtgtgataacacttttttacatgaaaata---tgtcacactattgtagcaggggagaggattcaaat |
90 |
Q |
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| T |
14467984 |
aatattgatgtgtgataacacttttttacatgaaaatattttgtcacactgttgcaccatgggagaggattcaaat |
14468059 |
T |
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