View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11068_low_6 (Length: 375)
Name: NF11068_low_6
Description: NF11068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11068_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 21 - 368
Target Start/End: Original strand, 20616098 - 20616442
Alignment:
| Q |
21 |
atatcaattgtacaactatcatcaaacatatgaaatttgtgacactgagcaaatctaattctacannnnnnncgtttgttttgtttatagttctgcaact |
120 |
Q |
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| T |
20616098 |
atatcaattgtacaactatcatcaaacatatgaaatttgtgacactgagcaaatctaattctatatttttttcgtttgttttgtttatagttctgcaact |
20616197 |
T |
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| Q |
121 |
tattagacacttgagtcataactatacatgagaatctctatgatatcttaattcaatggtaagatattaatattgtgtgatagggtgtggagcgatagag |
220 |
Q |
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| T |
20616198 |
tattaggcactcgagtcataactataaatgagaatctctatgttatcttaattcaatggtaagatattaatattgtgtgacagggtgtggagtgatagag |
20616297 |
T |
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| Q |
221 |
tcggcacatcatgtgttttaatcttgtctctcttttatttctctttggagtcttgttagatcttggattggtgttgaatctgctactcaggatcatttaa |
320 |
Q |
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|| || |||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |
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| T |
20616298 |
tctgctcatcatgtgttt---tcttgtccctcttttacttctctttggagtcttgttagatcttggattggtgttgaatccgttactcaggatcatttaa |
20616394 |
T |
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| Q |
321 |
gcgaccattttgttcaatttgtgcactcagcagatggtactcagtctc |
368 |
Q |
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| T |
20616395 |
gcgaccattttgttcaatttgtgcactcagcagatggtactcagtctc |
20616442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 26 - 197
Target Start/End: Original strand, 20620179 - 20620352
Alignment:
| Q |
26 |
aattgtacaactatcatcaaacatatgaaatttgtgacactgagcaaatctaattctacannnnnnncgtttgttttgtttatagttctgcaacttatta |
125 |
Q |
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| T |
20620179 |
aattgtacaactatcatcaaacatatgagatttgtgacactcagcaaatctagttctacattatttttgtttgttttgtttataattctgcaacttatta |
20620278 |
T |
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| Q |
126 |
gacacttgagtc--ataactatacatgagaatctctatgatatcttaattcaatggtaagatattaatattgtg |
197 |
Q |
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| T |
20620279 |
gacacttgagtctcatgactatacatgagaatctttatgatatcttaattcaatggtaagatattgatattgtg |
20620352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 21 - 197
Target Start/End: Complemental strand, 12059097 - 12058919
Alignment:
| Q |
21 |
atatcaattgtacaactatcatcaaacatatgaaatttgtgacactgagcaaatctaattctacannnnnnncgtttgttttgtttatagttctgcaact |
120 |
Q |
| |
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|||| |||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||| |||||||||||||||| |||||||||| |
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| T |
12059097 |
atattaattgtacaactatcatcaaacatatgagatttgtgacactcagcaaatctagttctacattatttttgtttgttttgtttataattctgcaact |
12058998 |
T |
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| Q |
121 |
tattagacacttgagtc--ataactatacatgagaatctctatgatatcttaattcaatggtaagatattaatattgtg |
197 |
Q |
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| T |
12058997 |
tatttgacacatgagtctcatgactatacattagaatctttatgatatcttaatttaatggtaggatattgatattgtg |
12058919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 204 - 345
Target Start/End: Complemental strand, 9909710 - 9909569
Alignment:
| Q |
204 |
ggtgtggagcgatagagtcggcacatcatgtgttttaatcttgtctctcttttatttctctttggagtcttgttagatcttggattggtgttgaatctgc |
303 |
Q |
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| T |
9909710 |
ggtgtggagccacggagtcggctcatcatgtgttcctatattgtccctcttttgattccctttggggtcttgttagattatggattagtgttgaatttgc |
9909611 |
T |
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| Q |
304 |
tactcaggatcatttaagcgaccattttgttcaatttgtgca |
345 |
Q |
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| T |
9909610 |
tgacctagatcacttaagtgaccattttgttcaatttatgca |
9909569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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