View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11068_low_8 (Length: 361)
Name: NF11068_low_8
Description: NF11068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11068_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 16 - 355
Target Start/End: Complemental strand, 1739248 - 1738916
Alignment:
| Q |
16 |
catgtaattgatttctcatttcnnnnnnncataagaaaatatctgtaagttagtagttttattactaatttacatatctcttgtttgaaaacttagttca |
115 |
Q |
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| T |
1739248 |
catgtaattgatttctcatttctttttttcataagaaaatatctgtaagttagtagtgttattact---ttacatatctcttgtttgaaaacttagttca |
1739152 |
T |
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| Q |
116 |
ccaaatgaattacctactcgaaactgatttctttatacatgcatgaattgaacttgtttacagatatagtaatagaaaaagtttaggaggaatagaactg |
215 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |
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| T |
1739151 |
ccaaatgaattacctactcgaaactgatatctttatacatg----aattgaacttgtttacagatataataatagaaaaagtttaggaggaatagagctg |
1739056 |
T |
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| Q |
216 |
atgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaaggcagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatca |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1739055 |
atgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaagttagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatca |
1738956 |
T |
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| Q |
316 |
tgtcaaatccattggccacagattctaaacttcttctctc |
355 |
Q |
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| T |
1738955 |
tgtcaaacccattggccacagattccaaacttcttctctc |
1738916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 103 - 355
Target Start/End: Complemental strand, 1717667 - 1717419
Alignment:
| Q |
103 |
aaaacttagttcaccaaatgaattacctactcgaaactgatttctttatacatgcatgaattgaacttgtttacagatatagtaatagaaaaagtttagg |
202 |
Q |
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| T |
1717667 |
aaaactttgttaaccaaatgaattacctactcgaaactgatttctttatacatg----aattgaacttgtttacagatacagtcatagaaaaagtttagg |
1717572 |
T |
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| Q |
203 |
aggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaactattacaaggcagcttatgatgttgtgaggaaatacatcccaaat |
302 |
Q |
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| T |
1717571 |
aggaatagagctgatgaatgagccactaggtgtcaatctagatagcttgaagaactattacagggaagcttatgatgttgtgaggaaatacatcccaaat |
1717472 |
T |
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| Q |
303 |
acttatgtgatcatgtcaaatccattggccacagattctaaacttcttctctc |
355 |
Q |
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| T |
1717471 |
acttatgtgatcatgtcaaatccattggccacagattctaaacttcttctctc |
1717419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 159 - 355
Target Start/End: Complemental strand, 1748967 - 1748771
Alignment:
| Q |
159 |
tgaattgaacttgtttacagatatagtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaact |
258 |
Q |
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||||||||| |||| |||| ||| |||||| | |||||||||||||||||| |||||||||||||||| |||||||||| ||||| |||||||| | |
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| T |
1748967 |
tgaattgaatttgtggacaggtatggtaataaaccaagtttaggaggaatagagctgatgaatgagccacaaggtgtcaatcttgatagtctcaagaagt |
1748868 |
T |
|
| Q |
259 |
attacaaggcagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtcaaatccattggccacagattctaaacttcttctctc |
355 |
Q |
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||||||||||||||||||||| |||||| ||||||| |||| | ||||||||||||||||||||||||||| |||||||||| ||||||||| |
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| T |
1748867 |
attacaaggcagcttatgatgctgtgagaaaatacaacccagaggcttatgtgatcatgtcaaatccattggatggagattctaaagctcttctctc |
1748771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 159 - 355
Target Start/End: Complemental strand, 1754283 - 1754087
Alignment:
| Q |
159 |
tgaattgaacttgtttacagatatagtaatagaaaaagtttaggaggaatagaactgatgaatgagccacttggtgtcaatcaagatagcctcaagaact |
258 |
Q |
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||||||||| |||| |||| ||| |||||||| |||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||||||| | |
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| T |
1754283 |
tgaattgaatttgtggacaggtatggtaatagaccaagtttaggaggaatagagttgatgaatgagccacaaggtgtcaatctagatagcctcaagaaat |
1754184 |
T |
|
| Q |
259 |
attacaaggcagcttatgatgttgtgaggaaatacatcccaaatacttatgtgatcatgtcaaatccattggccacagattctaaacttcttctctc |
355 |
Q |
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||||||||| |||||||||| ||||||||||||| |||||| |||||||||| |||||||| ||||||| ||||||||||| | |||||||| |
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| T |
1754183 |
attacaaggaggcttatgatgcagtgaggaaatacaatccaaatgcttatgtgataatgtcaaacccattggatgcagattctaaagtacttctctc |
1754087 |
T |
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