View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_high_12 (Length: 361)
Name: NF11069A_high_12
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 338; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 12843699 - 12843342
Alignment:
| Q |
1 |
gagggattggcttgatttcgaagtggatcagattgtacaagttgtaaggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtcc |
100 |
Q |
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| T |
12843699 |
gaggaattggcttgatttcgaagtggatcagagtgtacaagttggaaggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtcc |
12843600 |
T |
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| Q |
101 |
attgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagat |
200 |
Q |
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| T |
12843599 |
attgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagat |
12843500 |
T |
|
| Q |
201 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaata |
300 |
Q |
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| T |
12843499 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgttaatttcacctatagaggtagaaata |
12843400 |
T |
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| Q |
301 |
gaatcatatagtgtttgatattagtcttgttgagtattgcacttattttcttcgacat |
358 |
Q |
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| T |
12843399 |
gaatcatatagtgtttgatattagtcttgttgagtattgcacttattttgtttgacat |
12843342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 11 - 276
Target Start/End: Original strand, 12861792 - 12862057
Alignment:
| Q |
11 |
cttgatttcgaagtggatcagattgtacaagttgtaaggagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtccattgatgctt |
110 |
Q |
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| T |
12861792 |
cttggtttcaaagtggatcagagtattgaagttggtaggagtaattggaatcaagagaatctttatgcacatcaagttgcttatgcgtccattgatgctt |
12861891 |
T |
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| Q |
111 |
attgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgtta |
210 |
Q |
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| T |
12861892 |
attttgcgtttcttatcggaatttgtttccaagcttggaggtacccttaagatcgattttactttctaaatttcaatcaagattcaagattatagtgtta |
12861991 |
T |
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| Q |
211 |
atgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtta |
276 |
Q |
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| T |
12861992 |
atgtctactgttaagatcgattaatcactcttatgttcgtaactcattttagagattatagtgtta |
12862057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 201 - 275
Target Start/End: Complemental strand, 13125837 - 13125763
Alignment:
| Q |
201 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt |
275 |
Q |
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| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgtt |
13125763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 347
Target Start/End: Complemental strand, 13125587 - 13125539
Alignment:
| Q |
299 |
tagaatcatatagtgtttgatattagtcttgttgagtattgcacttatt |
347 |
Q |
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| T |
13125587 |
tagaataatacagtgtttgattttagtgttgttgagtattgcacttatt |
13125539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 219
Target Start/End: Complemental strand, 13125629 - 13125589
Alignment:
| Q |
179 |
aatttcaatcaagattcaagattatagtgttaatgtctact |
219 |
Q |
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| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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