View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_high_34 (Length: 210)
Name: NF11069A_high_34
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_high_34 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 198
Target Start/End: Original strand, 38741800 - 38741997
Alignment:
| Q |
1 |
ttccaaatttgcgtaatattcttcaacattttatactccttgagtatgtttttggagcttattatgcaagtttatatggtaatgatttgtaacatatcta |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38741800 |
ttccaaatttgtgtaatattcttcaacattttatactccttgagtatgtttttggagcttattatgcaagtttatatggtaatgatttgtaacatatcta |
38741899 |
T |
|
| Q |
101 |
tttcttaacacaaccggtaaattttctcaagcatcaataggtcttgctctacaccttactctttctttttgttgttgattccaccatgatttgtgaac |
198 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38741900 |
tttcttaacacaactggtaaattttctcaagcatcaataggtcttgctctacaccttactctttctttttgttgttgattccaccatgatttgtgaac |
38741997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 38784726 - 38784529
Alignment:
| Q |
1 |
ttccaaatttgcgtaatattcttcaacattttatactccttgagtatgtttttggagcttattatgcaagtttatatggtaatgatttgtaacatatcta |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
38784726 |
ttccaaatttgtgtaatattcttcaacattttatactccttgagtatgtttttggagcttattatgcaagtttatatggtaatgatctgtaacatatcta |
38784627 |
T |
|
| Q |
101 |
tttcttaacacaaccggtaaattttctcaagcatcaataggtcttgctctacaccttactctttctttttgttgttgattccaccatgatttgtgaac |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38784626 |
tttcttaacacaaccggtaaattttctcaagcatcaataggtcttgctcttcaccttactctttctttttgttgttgattccaccatgatttgtgaac |
38784529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 122 - 172
Target Start/End: Original strand, 30960935 - 30960985
Alignment:
| Q |
122 |
ttttctcaagcatcaataggtcttgctctacaccttactctttctttttgt |
172 |
Q |
| |
|
|||||||| | ||||||||||||||||| |||||||||||| ||||||||| |
|
|
| T |
30960935 |
ttttctcatgaatcaataggtcttgctccacaccttactctctctttttgt |
30960985 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University