View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_1 (Length: 655)
Name: NF11069A_low_1
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 600; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 9 - 628
Target Start/End: Original strand, 18721518 - 18722137
Alignment:
| Q |
9 |
atcatagaggcccacgagacattatctttgacaatagcttgttgaaaaacttcataagattcctctaaacaaccacatttcgagtacattgtaaaaagcg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18721518 |
atcatagaggcccacgagacattatctttgacaatagcttgttgaaaaacttcataagattcctctaaacaaccacatttcgagtacattgtaaaaagcg |
18721617 |
T |
|
| Q |
109 |
aacaaccaacagtagcattggtgactaatccagctttcaaaatgtaactatgcacctgtgaccctagacttaagctgctcgtaatactaagcaaactccc |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
18721618 |
aacaaccaacagtagcattggtgactaatccagctttcaaaatgtaactatgcacctgtgaccctagacttaagctgctcataatactaagcaaactccc |
18721717 |
T |
|
| Q |
209 |
actacaatcctcatcaggtttcactccttctcttaacattacagtgaataattcaagtgcccttccagaatttcggttttgagcaaaagaagacaacatg |
308 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18721718 |
aatacaatactcatcaggtttcactccttctcttaacattacagtgaataattcaagtgcccttccagaatttcggttttgagcaaaagaagacaacatg |
18721817 |
T |
|
| Q |
309 |
gacgcccatatgcccggatccttcatatttttcatctcgctgaaggctaactcagataatccaactcctcctatttttgcatacatgttgactaaagcag |
408 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18721818 |
gatgcccatatgcccggatccttcatatttttcatctcgctgaaggctaactcagataatccaactcctcctatttttgcatacatgttgactaaagcag |
18721917 |
T |
|
| Q |
409 |
ctccaaccttaacattcaaaatcaaccctaattttaataccaaggaatgaatttgtttcgcttcctcgatcagctcaggtttagcacatgcagaaagtac |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18721918 |
ctccaaccttaacattcaaaatcaaccctaattttaataccaaggaatgaatttgttttgcttcctcgatcagctcaggtttagcacatgcagaaagtac |
18722017 |
T |
|
| Q |
509 |
actagtaacggtgtaggcatttatctcatgccctatttgtcgcatatctttgaatagctttagtgcaaaagtagtatcatcctgttgcacaaacccagaa |
608 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18722018 |
actagtaacggtgtaggcatttatctcatgccctatttgtcgcatatctttgaatagctttagtgcaaaagtagtatcatcctgttgcacaaacccagaa |
18722117 |
T |
|
| Q |
609 |
ataatagcagtccaagaaac |
628 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
18722118 |
ataatagcagtccaagaaac |
18722137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University