View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_10 (Length: 473)
Name: NF11069A_low_10
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 12 - 471
Target Start/End: Complemental strand, 8944896 - 8944437
Alignment:
| Q |
12 |
gagacggaaaaattgaaattgatggaactagagatgaaagaaaacctcaacttcaatgcaaacagattctagttagacttttcatttctgcatcttcaaa |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
8944896 |
gagacggaaaaattgaaattgatggaactagagatgaaagaaaacctcaacttcaatgcaaacagattctagttagactcttcatttctgcatcgtcaaa |
8944797 |
T |
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| Q |
112 |
aacataaactcaattagatataatcaaaggaaaccaccaaatttatccatgtaatttattgcgctttcaaatggtccatgagattatgaatatttcaaat |
211 |
Q |
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| T |
8944796 |
aacataaactcaattagatacaatgaaaggaaaccaccaaatgtatccatgtaatttattgcgctttcaaatggtccatgagattatgaatattttaaat |
8944697 |
T |
|
| Q |
212 |
acgcctcttactcggtgaaacattactcatatctatatttctgtcaaactttcatgttatcacgtttcgtttacatccttatattttactacttattatc |
311 |
Q |
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| T |
8944696 |
acgtctcttactcggtgaaacattgatcatatctatctttctgtcaaactttatcgttaacacgtttcgcttacatccttatatttaaccacttagtatc |
8944597 |
T |
|
| Q |
312 |
aatttcgtcccagtaaaacgatgttaagcaactaagtttgacaaaaggatgaatgtgagtaacattaaaacgacgtcatgtaacatttgaaatattcata |
411 |
Q |
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||||||||| ||| |||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8944596 |
aatttcgtctcaggaaaaagatgctaagaaactaagtttgacaaaaggatgaatgtgagtaacattaaaacgacgtcatgtaacatttgaaatattcata |
8944497 |
T |
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| Q |
412 |
atttgacatacctatttaaaagaacttcacaaaatcataagccaatttgatggtttactc |
471 |
Q |
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| T |
8944496 |
atttgacatacctatttaaaagaacttcacaaaatcataggccaatttgatggtttactc |
8944437 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 21685579 - 21685541
Alignment:
| Q |
13 |
agacggaaaaattgaaattgatggaactagagatgaaag |
51 |
Q |
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|||| |||||| ||||||||||||||||||||||||||| |
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| T |
21685579 |
agacagaaaaagtgaaattgatggaactagagatgaaag |
21685541 |
T |
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