View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_104 (Length: 292)
Name: NF11069A_low_104
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_104 |
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Alignment Details
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 29442593 - 29442464
Alignment:
| Q |
8 |
cagagagaggattccggtaagtatctccggcggaagatccgccattggaaggaaggaaggaaggttctagttagggt-------ttagggtttttccttt |
100 |
Q |
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| T |
29442593 |
cagagagaggattccggtaagtatctccggcggaagatccaccattggaaggaagg----aaggttctagttagggtttaggccttagggtttttccttt |
29442498 |
T |
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| Q |
101 |
cttcctctccatgtacgacccaaatgcaacacag |
134 |
Q |
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| T |
29442497 |
cttcctctccttgtacgacccaaatgcaacacag |
29442464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 207 - 286
Target Start/End: Complemental strand, 29442390 - 29442311
Alignment:
| Q |
207 |
ttgattacgtgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttatt |
286 |
Q |
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| T |
29442390 |
ttgattacatgatcttggacgcacgaattatgaattactctgagttaatatccttcatttatgattctctctgttttatt |
29442311 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 8 - 106
Target Start/End: Original strand, 29424129 - 29424226
Alignment:
| Q |
8 |
cagagagaggattccggtaagtatctccggcggaagatccgccattggaaggaaggaaggaaggttctagttagggtttagggtttttcctttcttcct |
106 |
Q |
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| T |
29424129 |
cagagagaggattccggtgagtatctccggcggaagatccgtcattgg-agcttggaagttaggttctagctagggtttagagtttttcatttcttcct |
29424226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 29452585 - 29452537
Alignment:
| Q |
8 |
cagagagaggattccggtaagtatctccggcggaagatccgccattgga |
56 |
Q |
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| T |
29452585 |
cagagagaggataccggtaagtatctccggcggaagatccgccattgga |
29452537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 91
Target Start/End: Complemental strand, 29452503 - 29452466
Alignment:
| Q |
54 |
ggaaggaaggaaggaaggttctagttagggtttagggt |
91 |
Q |
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| T |
29452503 |
ggaaggaaggaaggaaggttgtagctagggtttagggt |
29452466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 46 - 103
Target Start/End: Original strand, 10354101 - 10354157
Alignment:
| Q |
46 |
ccgccattggaaggaaggaaggaaggttctagttagggtttagggtttttcctttctt |
103 |
Q |
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| T |
10354101 |
ccgccattgtaaggaaggaatgaaggttct-gctagggtttagggtttttcatttctt |
10354157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 9283404 - 9283343
Alignment:
| Q |
12 |
gagaggattccggtaagtatctccggcggaagatc---cgccattggaaggaaggaaggaag |
70 |
Q |
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| T |
9283404 |
gagaagatttcggcaagtatgtccggcggaagatcggacgccattggaaggaaggaaggaag |
9283343 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 67
Target Start/End: Original strand, 10336751 - 10336785
Alignment:
| Q |
33 |
tccggcggaagatccgccattggaaggaaggaagg |
67 |
Q |
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| T |
10336751 |
tccggcggaagatccgccattgtaaggaaggaagg |
10336785 |
T |
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