View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_109 (Length: 288)
Name: NF11069A_low_109
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_109 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 2 - 288
Target Start/End: Complemental strand, 13945058 - 13944772
Alignment:
| Q |
2 |
gagtaaaaaacaactcatgatgtaggtgggaatagcttgagtcacaattctaatgagaactcccctcccctccgagcaaaagaaaggttcttctctttcc |
101 |
Q |
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| T |
13945058 |
gagtaaaaaacaactcatgatgtaggtgggaatagcttgagtcacaattctaatgagaactcccctcccctccgagcaaaagaaaggttcttctctttca |
13944959 |
T |
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| Q |
102 |
aacctttcaaattactccaaattctttccatnnnnnnnttaaaatcttgaactttagatcttcccaattgagttagcatccctaagtacttagttatctg |
201 |
Q |
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| T |
13944958 |
aacctttcaaattactccaaattctttccataaaaaaattaaaatcttgaactttagatcttcccaattgagttagcatccctaagtacttagttatctg |
13944859 |
T |
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| Q |
202 |
attgacaatttttatatgcatttgactgtagaattctgctttaacccaagtaataagtcccttgctaaataccatttctgacttatc |
288 |
Q |
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| T |
13944858 |
attgacaatttttatatgcatttgactgtagaattctgctttaacccgagtaataagtcccttgctaaatgccatttctgacttatc |
13944772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 2 - 288
Target Start/End: Complemental strand, 14086247 - 14085961
Alignment:
| Q |
2 |
gagtaaaaaacaactcatgatgtaggtgggaatagcttgagtcacaattctaatgagaactcccctcccctccgagcaaaagaaaggttcttctctttcc |
101 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14086247 |
gagtaaaaaacaactcatgatgtaggtgggaatagcttgagtcacaattctaatgagaactcccctcccctccgagcaaaagaaaggttcttctctttca |
14086148 |
T |
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| Q |
102 |
aacctttcaaattactccaaattctttccatnnnnnnnttaaaatcttgaactttagatcttcccaattgagttagcatccctaagtacttagttatctg |
201 |
Q |
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| T |
14086147 |
aacctttcaaattactccaaattctttccataaaaaaattaaaatcttgaactttagatcttcccaattgagttagcatccctaagtacttagttatctg |
14086048 |
T |
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| Q |
202 |
attgacaatttttatatgcatttgactgtagaattctgctttaacccaagtaataagtcccttgctaaataccatttctgacttatc |
288 |
Q |
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| T |
14086047 |
attgacaatttttatatgcatttgactgtagaattctgctttaacccgagtaataagtcccttgctaaatgccatttctgacttatc |
14085961 |
T |
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