View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_11 (Length: 469)
Name: NF11069A_low_11
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_11 |
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| [»] chr6 (6 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 94; Significance: 1e-45; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 368 - 469
Target Start/End: Original strand, 1956962 - 1957063
Alignment:
| Q |
368 |
catattatggatttgattgaactttcatgcactttgaaggaggctagaggctgataggtttttcacaagcaacttcaatgaggagacatacaccaaaaag |
467 |
Q |
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| T |
1956962 |
catattatggatttgattaaattttcatgcactttgaaggaggctagaggctgataggtttttcacaagcaacttcaatgaggagacatacaccaaaaag |
1957061 |
T |
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| Q |
468 |
gg |
469 |
Q |
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| T |
1957062 |
gg |
1957063 |
T |
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Target: chr6; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 9 - 83
Target Start/End: Original strand, 1956779 - 1956853
Alignment:
| Q |
9 |
gagatgaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatcaaggtaaaaa |
83 |
Q |
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| T |
1956779 |
gagaagaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatctaggtaaaaa |
1956853 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 378 - 469
Target Start/End: Original strand, 1928076 - 1928167
Alignment:
| Q |
378 |
atttgattgaactttcatgcactttgaaggaggctagaggctgataggtttttcacaagcaacttcaatgaggagacatacaccaaaaaggg |
469 |
Q |
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| T |
1928076 |
atttgattgaactttaatgcactttgtaggaggctagaaggtgatagatttttcacaagctactacaatgaggagacatacaccaaaaaggg |
1928167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 378 - 469
Target Start/End: Original strand, 1942053 - 1942144
Alignment:
| Q |
378 |
atttgattgaactttcatgcactttgaaggaggctagaggctgataggtttttcacaagcaacttcaatgaggagacatacaccaaaaaggg |
469 |
Q |
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| T |
1942053 |
atttgattgaactttaatgcactttgcaggaggctagagggtgatagatttttcacaagcaactacaatgaggagacatacactgaaaaggg |
1942144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 1941688 - 1941761
Alignment:
| Q |
9 |
gagatgaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatcaaggtaaaa |
82 |
Q |
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| T |
1941688 |
gagaagaagataaagggttttgcaattagtgagacagcttttttaatcttccttctcatggcatctaggtaaaa |
1941761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 9 - 131
Target Start/End: Original strand, 1927578 - 1927701
Alignment:
| Q |
9 |
gagatgaagataaagggttttgcaattagtgagacatcttttgtgatattccttatcatggcatcaaggtaaaaaat-actaaaacttgttttgttttat |
107 |
Q |
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| T |
1927578 |
gagaagaagataaagggttttgcaataagtgaaacagcttttacaatatttcttctcatggcatctaggtaaaaaataaattacaattattttattttat |
1927677 |
T |
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| Q |
108 |
ttatgtttataccttcataatatt |
131 |
Q |
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| T |
1927678 |
tgatgtttttaccttcataatatt |
1927701 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 286 - 329
Target Start/End: Original strand, 36774869 - 36774912
Alignment:
| Q |
286 |
taatttttaaatcccataagaacaagtgtgatatgcctcagtat |
329 |
Q |
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| T |
36774869 |
taatttttaaatcccataagaacaagtgtgatatgcctcagtat |
36774912 |
T |
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