View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_112 (Length: 286)
Name: NF11069A_low_112
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_112 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 13555115 - 13554842
Alignment:
| Q |
1 |
tatgcttctgttccagcactatgcgtcggcttgtacgaaactgtatgcaatgaggccaggcaagatgccaatgcttgcttgaatcttttaaaaactgact |
100 |
Q |
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| T |
13555115 |
tatgcttctgttccagcactatgcgtcagcttgtatgaaactgtatgcaatgaggcgaggcaagatgccaatgcttgcttgaatcttttaaaaactgact |
13555016 |
T |
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| Q |
101 |
caaaaatcacctcagccacaaattatcatgatctctccaagtctatcgtggtttttgcatttaaccaggggttacaggctcaagcttatcttttaaaagt |
200 |
Q |
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| T |
13555015 |
caaaaatcacctcagccacaaattatcatgacctctccaagtctatcgtggtttttgcatttaaccaagggttacaggctcaagcttatcttttaaaagt |
13554916 |
T |
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| Q |
201 |
ggcaaaacaatttcccagtgatcaagctgttagtcaatgtgcaaatgaattttacataatgagtattagatatt |
274 |
Q |
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| T |
13554915 |
ggcaaaacaatttcccagtgatgaagctgttagtcaatgtgcaaatgaattttacataatgagtattagatatt |
13554842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 31 - 267
Target Start/End: Complemental strand, 13559212 - 13558976
Alignment:
| Q |
31 |
ttgtacgaaactgtatgcaatgaggccaggcaagatgccaatgcttgcttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatg |
130 |
Q |
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| T |
13559212 |
ttgtatgaaactgtatgcagtgaggccaggcaagatgccaatgcttgcttgaatcttttaaaaactgacccaaaaatcacctcagccacaaattatcatg |
13559113 |
T |
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| Q |
131 |
atctctccaagtctatcgtggtttttgcatttaaccaggggttacaggctcaagcttatcttttaaaagtggcaaaacaatttcccagtgatcaagctgt |
230 |
Q |
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| T |
13559112 |
acctctccaaatctatcttgagttttgcatttaacaaggggctagaggatcaagcttatcttttaaaagtggcaaaacaatttcccaataatcaagctat |
13559013 |
T |
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| Q |
231 |
tagtcaatgtgcaaatgaattttacataatgagtatt |
267 |
Q |
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| T |
13559012 |
tggtcaatgtgcaaatgtattttacaaaacgagtatt |
13558976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 14173132 - 14173071
Alignment:
| Q |
76 |
tgcttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatgatctctc |
137 |
Q |
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| T |
14173132 |
tgcttgaatattttgaaaactgacccaaaaatcacctcagccacaaattaccatgacctctc |
14173071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 14177668 - 14177607
Alignment:
| Q |
76 |
tgcttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatgatctctc |
137 |
Q |
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| T |
14177668 |
tgcttgaatattttgaaaactgacccaaaaatcacctcagccacaaattaccatgacctctc |
14177607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 138
Target Start/End: Complemental strand, 14166301 - 14166239
Alignment:
| Q |
76 |
tgcttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatgatctctcc |
138 |
Q |
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| T |
14166301 |
tgcttgaatattttgaaaactgacccaaaaatcacctcagcgacgaattaccatgacctctcc |
14166239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 131
Target Start/End: Original strand, 13505912 - 13505964
Alignment:
| Q |
79 |
ttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatga |
131 |
Q |
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| T |
13505912 |
ttgaatcttttgaaaactgacccaaatatcgccttagccacaaattatcatga |
13505964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 79 - 138
Target Start/End: Original strand, 13528555 - 13528614
Alignment:
| Q |
79 |
ttgaatcttttaaaaactgactcaaaaatcacctcagccacaaattatcatgatctctcc |
138 |
Q |
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||||||||| | ||||||||| |||| ||| ||| |||||||||||||||||| |||||| |
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| T |
13528555 |
ttgaatcttatgaaaactgacccaaatatccccttagccacaaattatcatgacctctcc |
13528614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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