View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_115 (Length: 283)

Name: NF11069A_low_115
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_115
NF11069A_low_115
[»] chr3 (3 HSPs)
chr3 (178-277)||(11307935-11308035)
chr3 (8-59)||(46496090-46496141)
chr3 (8-36)||(38793497-38793525)
[»] chr6 (1 HSPs)
chr6 (178-277)||(2198612-2198712)
[»] chr5 (4 HSPs)
chr5 (178-277)||(10689193-10689293)
chr5 (178-277)||(3697139-3697238)
chr5 (178-277)||(3699501-3699600)
chr5 (178-277)||(3869550-3869649)
[»] chr1 (3 HSPs)
chr1 (178-277)||(6301793-6301894)
chr1 (4-59)||(13876124-13876179)
chr1 (77-124)||(15897352-15897400)


Alignment Details
Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 11307935 - 11308035
Alignment:
Q  178 aatttgataccaaatttaatttggttattttaccaaattaccatgtgaaaaatactataagttaca-ctttgacttcacaattttttcacgtcacaatct 276  Q
    ||||||||||||| |||||||||||||||||||||||||| | ||| ||||||||||||||||| | || || ||||||||||||||||| |||||||||    
T  11307935 aatttgataccaactttaatttggttattttaccaaattatcctgtaaaaaatactataagttagatctctggcttcacaattttttcacatcacaatct 11308034  T
Q  277 c 277  Q
    |    
T  11308035 c 11308035  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 8 - 59
Target Start/End: Complemental strand, 46496141 - 46496090
Alignment:
Q  8 gagagtaatggcggatctgagtgattttatgattaacggcagcggcaaaagt 59  Q
    |||||||||||||||||||||||||||||  |||| || |||||||||||||    
T  46496141 gagagtaatggcggatctgagtgattttacaattaccgacagcggcaaaagt 46496090  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 36
Target Start/End: Complemental strand, 38793525 - 38793497
Alignment:
Q  8 gagagtaatggcggatctgagtgatttta 36  Q
    |||||||||||||||||||||||||||||    
T  38793525 gagagtaatggcggatctgagtgatttta 38793497  T

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Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 2198612 - 2198712
Alignment:
Q  178 aatttgataccaaatttaatttggttattttaccaaattaccatgtgaaaaatactataagttaca-ctttgacttcacaattttttcacgtcacaatct 276  Q
    ||||||||||||| |||||||||||||||||||||||||| | |||||||||||||||| | || | || | |||||||||||||||||| |||||||||    
T  2198612 aatttgataccaactttaatttggttattttaccaaattatcttgtgaaaaatactatatgctatatctctaacttcacaattttttcacatcacaatct 2198711  T
Q  277 c 277  Q
    |    
T  2198712 c 2198712  T

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Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 10689193 - 10689293
Alignment:
Q  178 aatttgataccaaatttaatttggttattttaccaaattaccatgtgaaaaatactataagttaca-ctttgacttcacaattttttcacgtcacaatct 276  Q
    ||||||||| ||||||||||| |||||||||||||||||||| | |||| |||||||||||||| | || |||||||||||||||||||| || ||||||    
T  10689193 aatttgatatcaaatttaattaggttattttaccaaattaccctatgaagaatactataagttagacctctgacttcacaattttttcacatcgcaatct 10689292  T
Q  277 c 277  Q
    |    
T  10689293 c 10689293  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 277
Target Start/End: Complemental strand, 3697238 - 3697139
Alignment:
Q  178 aatttgataccaaatttaatttggttattttaccaaattaccatgtgaaaaatactataagttacac-tttgacttcacaattttttcacgtcacaatct 276  Q
    |||||||||||||||||||||| ||||||||||  || || |  ||| |||||||||||||||| || ||||||||||||||||||||||  ||||||||    
T  3697238 aatttgataccaaatttaattttgttattttacggaactatccagtg-aaaatactataagttagacttttgacttcacaattttttcacaccacaatct 3697140  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 277
Target Start/End: Complemental strand, 3699600 - 3699501
Alignment:
Q  178 aatttgataccaaatttaatttggttattttaccaaattaccatgtgaaaaatactataagttacac-tttgacttcacaattttttcacgtcacaatct 276  Q
    |||||||||||||||||||||| ||||||||||  || || |  ||| |||||||||||||||| || ||||||||||||||||||||||  ||||||||    
T  3699600 aatttgataccaaatttaattttgttattttacggaactatccagtg-aaaatactataagttagacttttgacttcacaattttttcacaccacaatct 3699502  T

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Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 3869550 - 3869649
Alignment:
Q  178 aatttgataccaaatttaatttggttattttaccaaattaccatgtgaaaaatactataagttacac-tttgacttcacaattttttcacgtcacaatct 276  Q
    |||||||||||||||||||||| ||||||||||  || || |  ||| |||||||||||||||| || ||||||||||||||||||||||  ||||||||    
T  3869550 aatttgataccaaatttaattttgttattttacggaactatccagtg-aaaatactataagttagacttttgacttcacaattttttcacaccacaatct 3869648  T

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Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 178 - 277
Target Start/End: Original strand, 6301793 - 6301894
Alignment:
Q  178 aatttgataccaaatttaatttggttattttaccaaatta-ccatgtgaaaaatactataagttaca-ctttgacttcacaattttttcacgtcacaatc 275  Q
    ||||||||||||| ||||||||| |||||||||||||||| || ||||||||||||||||||||| | || |  ||||||||||||||||| ||||||||    
T  6301793 aatttgataccaactttaatttgattattttaccaaattatccttgtgaaaaatactataagttagatctctagcttcacaattttttcacatcacaatc 6301892  T
Q  276 tc 277  Q
    ||    
T  6301893 tc 6301894  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 4 - 59
Target Start/End: Original strand, 13876124 - 13876179
Alignment:
Q  4 agcagagagtaatggcggatctgagtgattttatgattaacggcagcggcaaaagt 59  Q
    |||||||||||| |||||||||||||||||||| ||||| || |||||||||||||    
T  13876124 agcagagagtaacggcggatctgagtgattttacgattaccgacagcggcaaaagt 13876179  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 15897400 - 15897352
Alignment:
Q  77 atgaattgtgtttctattttt-tgttctctttgtgtgtataaagttgat 124  Q
    |||||||||||||||| |||| |||||||||||  ||||||||||||||    
T  15897400 atgaattgtgtttctagttttctgttctctttggatgtataaagttgat 15897352  T

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