View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_116 (Length: 283)
Name: NF11069A_low_116
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_116 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 13944399 - 13944117
Alignment:
| Q |
1 |
ggaaacccataataacaagagtttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaatgccaacgactccttttctttt |
100 |
Q |
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| T |
13944399 |
ggaaacccatagtaacaagattttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaatgccaacaactccttttctttt |
13944300 |
T |
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| Q |
101 |
attagtattatttttaagaaaatggaaagcttcataagcacgtaaggagttatctgttatcagcctgctagagatgaaggcactataattttgggagtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13944299 |
attagtattatttttaagaaaatggaaagcttcataagcaagtaaggagttatctgttatcagcctgctagagatgaaggcactataattttgggagtgt |
13944200 |
T |
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| Q |
201 |
tatgagatatatcagtgctcgttgtcattattcactttttcttgtgtgcattgtgtgtcttcctttttcaaatttatagctga |
283 |
Q |
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| T |
13944199 |
tatgagatatatcagtgctcgttgtcattattcactttttcttttgtgcattgtgtgtcttcctttttcaaatttatagctga |
13944117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 283
Target Start/End: Complemental strand, 14085588 - 14085306
Alignment:
| Q |
1 |
ggaaacccataataacaagagtttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaatgccaacgactccttttctttt |
100 |
Q |
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||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14085588 |
ggaaacccatagtaacaagattttgctcaagaaaaccccattctatcctataataagccttttccatgtttagcttaatgccaacaactccttttctttt |
14085489 |
T |
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| Q |
101 |
attagtattatttttaagaaaatggaaagcttcataagcacgtaaggagttatctgttatcagcctgctagagatgaaggcactataattttgggagtgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14085488 |
attagtattatttttaagaaaatggaaagcttcataagcaagtaaggagttatctgttatcagcctgctagagatgaaggcactataattttgggagtgt |
14085389 |
T |
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| Q |
201 |
tatgagatatatcagtgctcgttgtcattattcactttttcttgtgtgcattgtgtgtcttcctttttcaaatttatagctga |
283 |
Q |
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| T |
14085388 |
tatgagatatatcagtgctcgttgtcattattcactttttcttttgtgcattgtgtgtcttcctttttcaaatttatagctga |
14085306 |
T |
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