View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_119 (Length: 279)
Name: NF11069A_low_119
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_119 |
 | |
|
| [»] scaffold1463 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 23 - 267
Target Start/End: Complemental strand, 48066831 - 48066587
Alignment:
| Q |
23 |
gaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48066831 |
gaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtgggacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaa |
48066732 |
T |
|
| Q |
123 |
gaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtgaacgagaatgtccataacc |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48066731 |
gaattacgagaagcggctgcaaaaagaatgaaatctgtggtttcaagatatagtggacaattaattgcatgggacgttgtgaacgagaatgtccataacc |
48066632 |
T |
|
| Q |
223 |
gcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48066631 |
gcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
48066587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 23 - 256
Target Start/End: Complemental strand, 48099776 - 48099543
Alignment:
| Q |
23 |
gaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaa |
122 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||| || |||| ||| ||||||||| |||||||| ||||||| |||| ||||||||||||| |
|
|
| T |
48099776 |
gaaattcgccaaagaaaatggcatttctgtcagaggtcataccgttttctgggacgatgaaacttttcagcctaaatgggttaagttcctatctcctgaa |
48099677 |
T |
|
| Q |
123 |
gaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtgaacgagaatgtccataacc |
222 |
Q |
| |
|
||||||||| ||||||||||||||||||| | |||||| |||||||| ||||| |||||| |||||||||||||||||||||| ||||||||||| ||| |
|
|
| T |
48099676 |
gaattacgaaaagcggctgcaaaaagaataagatctgtggtttcaaggtatagaggacaactgattgcatgggacgttgtgaatgagaatgtccactacc |
48099577 |
T |
|
| Q |
223 |
gcttttttgaggacaaactcggcgaaaatgcctc |
256 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| |
|
|
| T |
48099576 |
acttttttgagaacaaactcggcgaaaatgcctc |
48099543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 23 - 265
Target Start/End: Complemental strand, 48062742 - 48062500
Alignment:
| Q |
23 |
gaaatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaa |
122 |
Q |
| |
|
||||||||| || ||||||||||| ||||||||||||||| |||||||||| || ||||||| ||| || |||||| |||||| |||||||| |
|
|
| T |
48062742 |
gaaatttgctaaggaaaatggcatatctgtcagaggtcataacattttgtgggacagtgaaagacgtcaacctgaatgggatttgtccctgtctcctgat |
48062643 |
T |
|
| Q |
123 |
gaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtgaacgagaatgtccataacc |
222 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| || || ||||| |||| ||||||||||||||||||||||| || || ||||||||||| || |
|
|
| T |
48062642 |
gaattacgagaagcagctgcaaaaagaatgaaatccgtggtctcaaggtataaaggacaattgattgcatgggacgtggtaaatgagaatgtccacttcc |
48062543 |
T |
|
| Q |
223 |
gcttttttgaggacaaactcggcgaaaatgcctctgcagtata |
265 |
Q |
| |
|
||||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
48062542 |
acttttttgaggacaacctcggcaaaaatgcctctgcagtata |
48062500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 25 - 258
Target Start/End: Complemental strand, 48106375 - 48106142
Alignment:
| Q |
25 |
aatttgccaaagaaaatggcatttctgtcagaggtcatgccattttgtggaacgatgaaagatttcagccccaatgggtgaagtccctatctcctgaaga |
124 |
Q |
| |
|
||||||| ||||| ||||| |||||||||||||||||| |||||| ||| ||||||||| || ||| || ||||||| |||| |||| || || || |
|
|
| T |
48106375 |
aatttgctaaagataatggaatttctgtcagaggtcataacattttctgggacgatgaaaaatatcaacctgaatgggttaagtatttatcgcccgatga |
48106276 |
T |
|
| Q |
125 |
attacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtgaacgagaatgtccataaccgc |
224 |
Q |
| |
|
||| || |||| || ||||||||| ||||||||||| ||| |||| ||| |||||||||||||||| || ||||| || ||||||||| | | |
|
|
| T |
48106275 |
attgcgcaaagccgcgaaaaaaagaatcgaatctgttgttaaaaggtataaaggagaattgattgcatgggatgtggtgaatgaaaatgtccattttcac |
48106176 |
T |
|
| Q |
225 |
ttttttgaggacaaactcggcgaaaatgcctctg |
258 |
Q |
| |
|
|||| |||||||||||| || |||||||| |||| |
|
|
| T |
48106175 |
ttttatgaggacaaactaggtgaaaatgcatctg |
48106142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1463 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: scaffold1463
Description:
Target: scaffold1463; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 111 - 267
Target Start/End: Original strand, 849 - 1005
Alignment:
| Q |
111 |
ctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtgaacgaga |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
849 |
ctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgtggtttcaagatatagtggacaattgattgcatgggacgttgtgaacgaga |
948 |
T |
|
| Q |
211 |
atgtccataaccgcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
267 |
Q |
| |
|
||||||| ||||| |||||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
949 |
atgtccacaaccgatttttttaggacaaactcggagaaaatgcctctgcagtatatt |
1005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 105 - 267
Target Start/End: Complemental strand, 50231389 - 50231227
Alignment:
| Q |
105 |
aagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatctgttgtttcaagatatagtggacaattgattgcatgggacgttgtga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
50231389 |
aagtccctatctcctgaagaattacgagaagcggctgcaaaaagaatgaaatttttggtttcaagatatagtggacaattgattgcatgggacgttgtaa |
50231290 |
T |
|
| Q |
205 |
acgagaatgtccataaccgcttttttgaggacaaactcggcgaaaatgcctctgcagtatatt |
267 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
50231289 |
acgagaatgtccacaaccggttttttgaggacaaactcggcaaaaatgcctctgcagtatatt |
50231227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University