View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11069A_low_12 (Length: 462)
Name: NF11069A_low_12
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_12 |
 | |
|
| [»] scaffold0110 (4 HSPs) |
| |
|
Alignment Details
Target: scaffold0110 (Bit Score: 416; Significance: 0; HSPs: 4)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 22 - 462
Target Start/End: Original strand, 13061 - 13503
Alignment:
| Q |
22 |
aaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13061 |
aaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg |
13160 |
T |
|
| Q |
122 |
gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13161 |
gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa |
13260 |
T |
|
| Q |
222 |
tttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttttagattaa--gtgtgtttagat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13261 |
tttgatattgtcacatgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttttagattaagtgtgtgtttagat |
13360 |
T |
|
| Q |
320 |
tatccgtgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttca |
419 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
13361 |
tatccatgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttca |
13460 |
T |
|
| Q |
420 |
acaaaatcacaaggtgcaactgtgatttcgtcaaactcgattt |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13461 |
acaaaatcacaaggtgcaactgtgatttcgtcaaactcgattt |
13503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 22 - 462
Target Start/End: Original strand, 20798 - 21240
Alignment:
| Q |
22 |
aaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20798 |
aaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg |
20897 |
T |
|
| Q |
122 |
gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20898 |
gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa |
20997 |
T |
|
| Q |
222 |
tttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttttagattaa--gtgtgtttagat |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
20998 |
tttgatattgtcacatgctgctgctgctcaaagatatagacagaaataccaggtaattttagtattttgattcatttttagattaagtgtgtgtttagat |
21097 |
T |
|
| Q |
320 |
tatccgtgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttca |
419 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
|
|
| T |
21098 |
tatccatgagtttgctagaatcacgatgtgtcatagttgagtttgtcacaatcacgatgtgccatagtgatttcgccaaaaactacattttgaagcttca |
21197 |
T |
|
| Q |
420 |
acaaaatcacaaggtgcaactgtgatttcgtcaaactcgattt |
462 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21198 |
acaaaatcacaaggtgcaactgtgatttcgtcaaactcgattt |
21240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #3
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 22 - 356
Target Start/End: Original strand, 29918 - 30254
Alignment:
| Q |
22 |
aaagattttgcggattatgcagatttttgtttcaaaacatttggagacagagttaagaactggatgactttcaatgaaccaagagttattgctgcacttg |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
29918 |
aaagattttgcggattatgcagatttttgttttaagacatttggagacagagttaagaattggatgaccttcaatgaaccaagagttgttgctgcacttg |
30017 |
T |
|
| Q |
122 |
gttatgatactggcttttttgcccctggaaggtgttcaaaagaatatggaaattgtactgctggaaattcaggaactgagccttatattgtagctcacaa |
221 |
Q |
| |
|
||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30018 |
gttatgataatggcttttttgcccctggaagatgttcaaaagaatatggaaattgtacagctggaaattcaggaactgagccttatactgtagctcacaa |
30117 |
T |
|
| Q |
222 |
tttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaattttagtattttgattcatttttagattaag--tgtgtttagat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||||| ||| |
|
|
| T |
30118 |
tttgatattgtcacatgctgctgctgctcaaagatatagagagaaataccaggtaatattagtattttgattcgtttttagattaagtatgtgtttggat |
30217 |
T |
|
| Q |
320 |
tatccgtgagtttgctagaatcacgatgtgtcatagt |
356 |
Q |
| |
|
|| | ||||||||| ||| ||| |||||| |||||| |
|
|
| T |
30218 |
tagcagtgagtttgtcagagtcatgatgtgccatagt |
30254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 357 - 456
Target Start/End: Original strand, 30224 - 30323
Alignment:
| Q |
357 |
tgagtttgtcacaatcacgatgtgccataatgatttcgccaaaaactacatttggaagcttcaacaaaatcacaaggtgcaactgtgatttcgtcaaact |
456 |
Q |
| |
|
||||||||||| | ||| ||||||||||| |||||| | ||||||||||| || | |||||||||||| ||||| ||||||||||||||||||||||||| |
|
|
| T |
30224 |
tgagtttgtcagagtcatgatgtgccatagtgatttaggcaaaaactacactttgcagcttcaacaaagtcacatggtgcaactgtgatttcgtcaaact |
30323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 31639059 - 31639108
Alignment:
| Q |
52 |
ttcaaaacatttggagacagagttaagaactggatgactttcaatgaacc |
101 |
Q |
| |
|
|||||| | |||||||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
31639059 |
ttcaaagcttttggagacagagttaagcactggattaccttcaatgaacc |
31639108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University