View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_127 (Length: 270)
Name: NF11069A_low_127
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_127 |
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Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 255
Target Start/End: Complemental strand, 1333270 - 1333022
Alignment:
| Q |
7 |
cattacaccttacaacttgcaatattttcaactactacggtggtcaagaaggtgagcttctgctagcaaggtatatcttgaagaatgcgagagttttaca |
106 |
Q |
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| T |
1333270 |
cattacaccttacaacttgcaatattttcaactactacggtggtcaagaaggtgagcttctgctagcaaggtatatcttgaagaatgcgagagttttaca |
1333171 |
T |
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| Q |
107 |
aaccatgacaatatggaatatatgtttcaaaataaaaggaaaactatgctcatgcccaagagcctctgcaacatgtaaacttgccatttatgatgctcca |
206 |
Q |
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| T |
1333170 |
aaccatgacaatatggaatatatgtttcaaaataaaaggaaaactatgctcatgcccaagagcctctgcaacatgtaaacttgccatttatgatgctcca |
1333071 |
T |
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| Q |
207 |
atgtactcccgtcgtcccttaatataagtggcttctcggtacttgtcat |
255 |
Q |
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| T |
1333070 |
atgtactcccgtcgtcccttaatataagtggcttctcggtacttgtcat |
1333022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 61 - 118
Target Start/End: Original strand, 12635949 - 12636006
Alignment:
| Q |
61 |
agcttctgctagcaaggtatatcttgaagaatgcgagagttttacaaaccatgacaat |
118 |
Q |
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| T |
12635949 |
agcttatgctagcaaggtatattttgaagaatgcaagagttttacaaaccatgacaat |
12636006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 60 - 124
Target Start/End: Complemental strand, 41662590 - 41662526
Alignment:
| Q |
60 |
gagcttctgctagcaaggtatatcttgaagaatgcgagagttttacaaaccatgacaatatggaa |
124 |
Q |
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| T |
41662590 |
gagcttatgctagcaaggtatgttttgaagaatgcaagagttttacaaaccatgaaaatctggaa |
41662526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 118
Target Start/End: Complemental strand, 49445394 - 49445333
Alignment:
| Q |
57 |
ggtgagcttctgctagcaaggtatatcttgaagaatgcgagagttttacaaaccatgacaat |
118 |
Q |
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| T |
49445394 |
ggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaat |
49445333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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