View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_13 (Length: 455)

Name: NF11069A_low_13
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_13
NF11069A_low_13
[»] chr4 (4 HSPs)
chr4 (24-435)||(54396536-54396947)
chr4 (172-435)||(23587525-23587788)
chr4 (172-435)||(23596377-23596640)
chr4 (172-246)||(35132750-35132824)
[»] chr7 (16 HSPs)
chr7 (172-435)||(8102780-8103043)
chr7 (48-435)||(8017081-8017468)
chr7 (66-320)||(39985874-39986128)
chr7 (172-242)||(7877525-7877595)
chr7 (172-293)||(8602229-8602350)
chr7 (172-292)||(8590894-8591014)
chr7 (166-246)||(10494160-10494240)
chr7 (175-246)||(17260543-17260614)
chr7 (181-242)||(8382677-8382738)
chr7 (166-246)||(13333242-13333322)
chr7 (175-218)||(6789842-6789885)
chr7 (172-246)||(3147574-3147648)
chr7 (175-305)||(8585501-8585631)
chr7 (172-242)||(8636135-8636205)
chr7 (169-215)||(8659696-8659742)
chr7 (166-215)||(1301797-1301846)
[»] chr2 (6 HSPs)
chr2 (172-308)||(17716485-17716621)
chr2 (139-383)||(5445510-5445754)
chr2 (165-241)||(12234996-12235072)
chr2 (172-239)||(12245198-12245265)
chr2 (169-218)||(7542556-7542605)
chr2 (172-242)||(16657309-16657379)
[»] chr1 (1 HSPs)
chr1 (169-242)||(4678347-4678420)


Alignment Details
Target: chr4 (Bit Score: 412; Significance: 0; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 24 - 435
Target Start/End: Complemental strand, 54396947 - 54396536
Alignment:
Q  24 gtttaaagtcgttccaggtcccgctgaaaaacctatgatcgttgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtg 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396947 gtttaaagtcgttccaggtcccgctgaaaaacctatgatcgttgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtg 54396848  T
Q  124 ttgatcaagatgagagaagttgctgaagcttttcttggtcatccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaag 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396847 ttgatcaagatgagagaagttgctgaagcttttcttggtcatccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaag 54396748  T
Q  224 ctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttc 323  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396747 ctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttc 54396648  T
Q  324 gagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagct 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396647 gagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagct 54396548  T
Q  424 actgctggtgat 435  Q
    ||||||||||||    
T  54396547 actgctggtgat 54396536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 172 - 435
Target Start/End: Original strand, 23587525 - 23587788
Alignment:
Q  172 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 271  Q
    |||||||| ||||| ||||| |||||||| ||||| ||||| |||||||||||||| |||||||| ||||  ||||| ||  | ||||||||||| ||||    
T  23587525 aagaatgccgttgtaactgtgcctgcttacttcaacgattcacaacgtcaagctacaaaagatgccggtgtcatttctggactcaatgtgttgagaatta 23587624  T
Q  272 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 371  Q
    ||||||| ||||| |||||||| |||||||||||| | |||||||||||| | || |  || ||  ||||||| |||||||| ||  | || ||||||||    
T  23587625 ttaatgaacctaccgctgctgctattgcttatggtcttgataagaaagctacaagcacgggtgagaagaacgttcttattttcgatcttggtggtggaac 23587724  T
Q  372 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgat 435  Q
    ||| |||||||| || ||||||||||| ||||| ||||| || || |||||||| |||||||||    
T  23587725 ttttgatgtttccctacttactattgaggaaggtatctttgaggtcaaagctacagctggtgat 23587788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 172 - 435
Target Start/End: Original strand, 23596377 - 23596640
Alignment:
Q  172 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 271  Q
    |||||||| ||||| || || ||||| || ||||| ||||| |||||||||||||| || ||||||||||  ||||| ||  | |||||| |||| ||||    
T  23596377 aagaatgccgttgtaaccgtgcctgcatacttcaacgattcacaacgtcaagctactaaggatgctggtgtcatttctggactcaatgtgatgagaatta 23596476  T
Q  272 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 371  Q
    |||| ||||| |||||||| || |||||||||||| | |||||||||||| | || |  || ||  ||||||| |||||||| ||  | || ||||||||    
T  23596477 ttaacgagcccactgctgccgctattgcttatggtcttgataagaaagctacaagtactggtgagaagaacgttcttattttcgatcttggtggtggaac 23596576  T
Q  372 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgat 435  Q
    ||| |||||||| |||||||||||||| ||||| ||||| || ||||||||||| |||||||||    
T  23596577 ttttgatgtttcacttcttactattgaggaaggtatctttgaggtgaaagctacagctggtgat 23596640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 35132824 - 35132750
Alignment:
Q  172 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 246  Q
    |||||||| ||||||||||| ||||||||||| | ||||||||||||  |||| || | ||||||||||||||||    
T  35132824 aagaatgcagttgttactgtgcctgcttattttagtgattctcaacgaaaagccactatagatgctggtgctatt 35132750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 64; Significance: 8e-28; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 172 - 435
Target Start/End: Complemental strand, 8103043 - 8102780
Alignment:
Q  172 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 271  Q
    |||||||| || || ||||| |||||||| |||||||||||||| |||||||| || ||||||||||||| |||  | ||||| ||||| ||||| ||||    
T  8103043 aagaatgccgtcgtcactgtccctgcttacttcaatgattctcagcgtcaagcaactaaagatgctggtgttatcgctggtttaaatgttttgagaatta 8102944  T
Q  272 ttaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgcttatttttgacttgggaggtggaac 371  Q
    |||||||||| ||||||||||| ||||| || ||| | || || || ||  | ||    || ||  |||||||| | || ||||| ||||| ||||| ||    
T  8102943 ttaatgagccaactgctgctgctattgcctacggtcttgacaaaaaggcgacaagtgttggtgagaagaacgtgttgatctttgatttgggtggtggtac 8102844  T
Q  372 tttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgat 435  Q
    ||| ||||| || ||||||||||||||||| || || || ||||| || |||||||| ||||||    
T  8102843 ttttgatgtgtcacttcttactattgaagagggtatatttgaagttaaggctactgcaggtgat 8102780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 48 - 435
Target Start/End: Original strand, 8017081 - 8017468
Alignment:
Q  48 tgaaaaacctatgatcgttgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagagaagttgct 147  Q
    |||||| || ||||| | |||||| ||||| ||||| || ||| ||||||| || ||||||||||| || |||||  | || |||||| | ||  |||||    
T  8017081 tgaaaagccaatgattggtgttaactacaagggtgaggacaagcaatttgctgctgaggaaatttcgtctatggtactcataaagatgcgtgagattgct 8017180  T
Q  148 gaagcttttcttggtcatccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctattt 247  Q
    |||||||  || |||    | ||||||||||| |||||||| ||||| ||||| ||||||||||| || |||||||| || || ||||| ||||  |||     
T  8017181 gaagcttacctcggttcaactgtgaagaatgccgttgttacagttccagcttacttcaatgattcgcagcgtcaagccacaaaggatgccggtgtcattg 8017280  T
Q  248 cgggtttgaatgtgttgaggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaacagaacgtgct 347  Q
    | ||  | ||||| ||||| ||||| || ||||| || ||||| || ||||| || ||  | || || || ||| | ||    |||||  |||| ||| |    
T  8017281 caggactcaatgttttgagaattatcaacgagccaacagctgcagctattgcgtacggacttgacaaaaaggctacaagtgttggcgagaagaatgtgtt 8017380  T
Q  348 tatttttgacttgggaggtggaactttcgatgtttctcttcttactattgaagaagggatcttcgaagtgaaagctactgctggtgat 435  Q
     || ||||||||||||||||| ||||| ||||| |||||||||||||||||||| || || || ||||| || |||||||||||||||    
T  8017381 gatctttgacttgggaggtggtacttttgatgtgtctcttcttactattgaagagggtatttttgaagttaaggctactgctggtgat 8017468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 66 - 320
Target Start/End: Complemental strand, 39986128 - 39985874
Alignment:
Q  66 tgttaattacaaaggtgaagagaagaaatttgcagcagaggaaatttcttcaatggtgttgatcaagatgagagaagttgctgaagcttttcttggtcat 165  Q
    |||||| |||||||||||||| ||| ||||||| || || || || ||||| |||||| | || |||||| | ||  |||| ||||| |  ||||||  |    
T  39986128 tgttaactacaaaggtgaagataaggaatttgctgccgaagagatctcttccatggtgctaatgaagatgcgtgagattgccgaagcgtaccttggttct 39986029  T
Q  166 ccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttga 265  Q
     |  | |||||||||||||||||||| |||||||| || ||||| || || ||||||||||| || |||||||| | |||| | ||| | |||||  ||     
T  39986028 gccattaagaatgctgttgttactgtccctgcttactttaatgactcccagcgtcaagctaccaaggatgctggagttattgccggtcttaatgtcatgc 39985929  T
Q  266 ggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagc 320  Q
    | ||||| |||||||| ||||||||||| |||||||||||| | || ||||||||    
T  39985928 gaattatcaatgagcccactgctgctgccattgcttatggtcttgacaagaaagc 39985874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 7877525 - 7877595
Alignment:
Q  172 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 242  Q
    |||||||| ||||||||||| || |||||||||||||||||||||||  |||| || ||||||||||||||    
T  7877525 aagaatgcagttgttactgtgccggcttatttcaatgattctcaacgaaaagccacaaaagatgctggtgc 7877595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 172 - 293
Target Start/End: Complemental strand, 8602350 - 8602229
Alignment:
Q  172 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 271  Q
    |||||||| ||||||||||| || |||||||| ||||||||||| ||  |||| || |||||||||||||| ||| | ||| | |||||  || |||| |    
T  8602350 aagaatgcagttgttactgtgccggcttattttaatgattctcagcgaaaagccacaaaagatgctggtgccattgctggtctcaatgtaatgcggataa 8602251  T
Q  272 ttaatgagcctactgctgctgc 293  Q
    | |||||||| ||||| |||||    
T  8602250 tcaatgagccaactgcagctgc 8602229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 172 - 292
Target Start/End: Complemental strand, 8591014 - 8590894
Alignment:
Q  172 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 271  Q
    |||||||| ||||||||||| || |||||||| |||||||||||  |  ||||||| |||||||||||||  ||| | || ||||||||  || |||| |    
T  8591014 aagaatgcagttgttactgtgccagcttattttaatgattctcagaggaaagctaccaaagatgctggtgtcattgctggcttgaatgtaatgcggataa 8590915  T
Q  272 ttaatgagcctactgctgctg 292  Q
    ||||||| || ||||| ||||    
T  8590914 ttaatgaaccaactgccgctg 8590894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 10494160 - 10494240
Alignment:
Q  166 ccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 246  Q
    ||||| |||||||||||||||||||| || ||||| ||||| |||||||||||  | ||||| |  |||||||||||||||    
T  10494160 ccagtcaagaatgctgttgttactgtgccggcttacttcaacgattctcaacgaaaggctactattgatgctggtgctatt 10494240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 175 - 246
Target Start/End: Complemental strand, 17260614 - 17260543
Alignment:
Q  175 aatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 246  Q
    |||| |||| ||||||||||||||||||||||||||||||| ||  |||| || | ||||||||||| ||||    
T  17260614 aatgttgttattactgttcctgcttatttcaatgattctcagcgaaaagccaccatagatgctggtgttatt 17260543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 181 - 242
Target Start/End: Original strand, 8382677 - 8382738
Alignment:
Q  181 gttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 242  Q
    |||||||| || ||||| ||||||||||||||||||||  |||| || ||||||||||||||    
T  8382677 gttgttaccgtgcctgcatatttcaatgattctcaacggaaagccacaaaagatgctggtgc 8382738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 246
Target Start/End: Original strand, 13333242 - 13333322
Alignment:
Q  166 ccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 246  Q
    ||||| |||||||| ||||||||||| || ||||| |||||||||||||| ||  | || || | ||||||||||||||||    
T  13333242 ccagtcaagaatgccgttgttactgtgccggcttacttcaatgattctcagcgaaaggccaccatagatgctggtgctatt 13333322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 175 - 218
Target Start/End: Complemental strand, 6789885 - 6789842
Alignment:
Q  175 aatgctgttgttactgttcctgcttatttcaatgattctcaacg 218  Q
    ||||| ||| ||||||| ||||||||||||||||||||||||||    
T  6789885 aatgcagttattactgtgcctgcttatttcaatgattctcaacg 6789842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 246
Target Start/End: Complemental strand, 3147648 - 3147574
Alignment:
Q  172 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatt 246  Q
    |||||||| |||||||| || |||||||||||||||||| |||| ||  |||| || | ||||||||||| ||||    
T  3147648 aagaatgcagttgttaccgtacctgcttatttcaatgatgctcagcggaaagcgacaatagatgctggtgttatt 3147574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 175 - 305
Target Start/End: Original strand, 8585501 - 8585631
Alignment:
Q  175 aatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggattatta 274  Q
    ||||| ||||| ||||| ||||||||||||||||||||||| ||  |||| || |  ||||||||||| ||| | ||  | |||||  ||||||| || |    
T  8585501 aatgcagttgtgactgtgcctgcttatttcaatgattctcagcgaaaagccaccatggatgctggtgccattgctggccttaatgttatgaggataatca 8585600  T
Q  275 atgagcctactgctgctgcaattgcttatgg 305  Q
    |||| || |||||||| || ||||| |||||    
T  8585601 atgaacccactgctgcagctattgcatatgg 8585631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 8636135 - 8636205
Alignment:
Q  172 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 242  Q
    |||||||| ||  ||||||| || |||||||||||||||||||| ||| || | || ||||||||||||||    
T  8636135 aagaatgcagtcattactgtgcccgcttatttcaatgattctcagcgtaaatccaccaaagatgctggtgc 8636205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 169 - 215
Target Start/End: Complemental strand, 8659742 - 8659696
Alignment:
Q  169 gtgaagaatgctgttgttactgttcctgcttatttcaatgattctca 215  Q
    |||||||||||||||||||| || ||||| || ||||||||||||||    
T  8659742 gtgaagaatgctgttgttacagtgcctgcatagttcaatgattctca 8659696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 1301846 - 1301797
Alignment:
Q  166 ccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctca 215  Q
    |||||||  ||||||||||||||||| |||||  ||||||||||||||||    
T  1301846 ccagtgacaaatgctgttgttactgtgcctgcacatttcaatgattctca 1301797  T

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Target: chr2 (Bit Score: 45; Significance: 2e-16; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 172 - 308
Target Start/End: Original strand, 17716485 - 17716621
Alignment:
Q  172 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgctatttcgggtttgaatgtgttgaggatta 271  Q
    |||||||| ||||||||||| |||||||| || |||  ||||||  | |||||||| ||  |||||||||||||| | ||| | ||| |  |||| ||||    
T  17716485 aagaatgccgttgttactgtccctgcttactttaatttttctcagagacaagctactaagcatgctggtgctattgctggtcttaatttcatgagaatta 17716584  T
Q  272 ttaatgagcctactgctgctgcaattgcttatggttt 308  Q
    |||||||||| |||||||| || ||||||||||||||    
T  17716585 ttaatgagcccactgctgcagccattgcttatggttt 17716621  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 139 - 383
Target Start/End: Original strand, 5445510 - 5445754
Alignment:
Q  139 gaagttgctgaagcttttcttggtcatccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctg 238  Q
    |||||||||||| ||| | | ||||||  |||||| ||||||||| | ||||||||||| || |||||  | || ||  | |||||||| || ||||| |    
T  5445510 gaagttgctgaaacttatttgggtcatgaagtgaacaatgctgttatcactgttcctgcctacttcaacaactcacagagacaagctacaaatgatgcag 5445609  T
Q  239 gtgctatttcgggtttgaatgtgttgaggattattaatgagcctactgctgctgcaattgcttatggtttggataagaaagcttcgagaaaaggcgaaca 338  Q
    |    ||| | ||||| |||||| ||||||| || || ||||||||||| ||||| ||||||||||||||||| ||||||   | |||| |||| ||  |    
T  5445610 gaaaaattgccggttttaatgtgatgaggatcatcaacgagcctactgcagctgctattgcttatggtttggacaagaaaatgtggagagaaggtgagaa 5445709  T
Q  339 gaacgtgcttatttttgacttgggaggtggaactttcgatgtttc 383  Q
    ||| |||||| | |||||  | || |||||||| |||||||||||    
T  5445710 gaatgtgcttgtgtttgatcttggtggtggaacattcgatgtttc 5445754  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 165 - 241
Target Start/End: Complemental strand, 12235072 - 12234996
Alignment:
Q  165 tccagtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtg 241  Q
    |||||| |||||||| |||||||| || ||||||||||||||||||||||||||  |||| || | |||||||||||    
T  12235072 tccagttaagaatgcagttgttaccgtgcctgcttatttcaatgattctcaacgaaaagcaactatagatgctggtg 12234996  T

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Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 12245198 - 12245265
Alignment:
Q  172 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctgg 239  Q
    |||||||||||||||||||| ||||||||||| | ||||||||| ||  |||| |||| |||||||||    
T  12245198 aagaatgctgttgttactgtacctgcttattttagtgattctcagcgaaaagcaacgatagatgctgg 12245265  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 218
Target Start/End: Complemental strand, 7542605 - 7542556
Alignment:
Q  169 gtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacg 218  Q
    |||| |||||| ||||||||||| ||||||||||| ||||||||||||||    
T  7542605 gtgacgaatgcagttgttactgtacctgcttattttaatgattctcaacg 7542556  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 172 - 242
Target Start/End: Original strand, 16657309 - 16657379
Alignment:
Q  172 aagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 242  Q
    |||||||||||||||||||| || ||||| ||||||||||| || ||  |||| || | ||||||||||||    
T  16657309 aagaatgctgttgttactgtgccagcttacttcaatgattcgcagcgaaaagccaccatagatgctggtgc 16657379  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 169 - 242
Target Start/End: Original strand, 4678347 - 4678420
Alignment:
Q  169 gtgaagaatgctgttgttactgttcctgcttatttcaatgattctcaacgtcaagctacgaaagatgctggtgc 242  Q
    ||||||||||  ||||||||||| ||||| || |||||||||||||||||  ||||||| | ||||||||||||    
T  4678347 gtgaagaatgtcgttgttactgtgcctgcatacttcaatgattctcaacgaaaagctaccatagatgctggtgc 4678420  T

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