View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_130 (Length: 266)
Name: NF11069A_low_130
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_130 |
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Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 20 - 254
Target Start/End: Complemental strand, 638306 - 638072
Alignment:
| Q |
20 |
gaaatcgtcgtcatctcaccagaacccgtcaaactctcacactcaacaactcactcaccctctctcccgtctaaatcaatggaacccagtacccattgaa |
119 |
Q |
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| T |
638306 |
gaaatcgtcgtcatctcaccagaacccgtcaaactctcacactcaacaactcactcaccctctctcccgtctaaatcaatggaacccagtacccattgaa |
638207 |
T |
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| Q |
120 |
ctcttcaaacccatagactgaacttagaaatccttaaaataatttgaaaccctaagattcgattgaacccagaaagtggtaatgaactatctcgtttatt |
219 |
Q |
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| T |
638206 |
ctcttcaaacccatagactgaacttagaaatccttaaaataatttgaagccctaagattcaattgaacccagaaagtggtaatgaactatctcgtttatt |
638107 |
T |
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| Q |
220 |
actcttcgttcatgttgcttctgaaagtttatatt |
254 |
Q |
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| T |
638106 |
actcttcgttcatgttgcttctgaaagtttatatt |
638072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 36392872 - 36392821
Alignment:
| Q |
20 |
gaaatcgtcgtcatctcaccagaacccgtcaaactctcacactcaacaactc |
71 |
Q |
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| T |
36392872 |
gaaatcgtcgtcgtctcaccagaacccgtcaaactttcactcgcaacaactc |
36392821 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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