View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_132 (Length: 266)
Name: NF11069A_low_132
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_132 |
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Alignment Details
Target: chr4 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 11 - 260
Target Start/End: Complemental strand, 38145466 - 38145217
Alignment:
| Q |
11 |
tatgaaaggtgtttcgattttggaaacatatgaaagtccttcatagtcatggccaccacttcttactcttagatggattccaagtttcttggagcaaatt |
110 |
Q |
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| T |
38145466 |
tatgaaaggtgtttcgattttggaaacatatgaaagtccttcatagtcatggccaccacttcttactcttagatggattccaagtttcttggagcaaatt |
38145367 |
T |
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| Q |
111 |
acggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcggtgtagatggtgccaaacaccttaggttcattgctaaggaatcaa |
210 |
Q |
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| T |
38145366 |
acggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcggtgtagatggtgccaaacaccttaggttcattgctaaggaatcaa |
38145267 |
T |
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| Q |
211 |
ggatggttgcgaatgaaggttcatttggagtgtaaattgttgtatgaaat |
260 |
Q |
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| T |
38145266 |
ggatggttgcgaatgaaggttcatttggagtgtaaattgttgtatgaaat |
38145217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 11 - 190
Target Start/End: Original strand, 11787354 - 11787533
Alignment:
| Q |
11 |
tatgaaaggtgtttcgattttggaaacatatgaaagtccttcatagtcatggccaccacttcttactcttagatggattccaagtttcttggagcaaatt |
110 |
Q |
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||||||||| |||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| || ||| | |
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| T |
11787354 |
tatgaaaggcgtttcgatttcggaaacatatgagagtccttcataatcatggccaccacttcttactcttagatgaataccaagtttctttgaacaagta |
11787453 |
T |
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| Q |
111 |
acggctgcttggacatgggaatcttgggagggtgtgaatatgaattcgggtttcggtgtagatggtgccaaacaccttag |
190 |
Q |
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| T |
11787454 |
acagctacttggacatgtgaatcggttaagggtgtgaatatgaattcgggttttggagcagaaggtaccaaataccttag |
11787533 |
T |
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