View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_14 (Length: 454)
Name: NF11069A_low_14
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 389; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 25 - 433
Target Start/End: Original strand, 37791818 - 37792226
Alignment:
| Q |
25 |
ctaatggaagtggagaggatattcttggcgaaggaaatgaaacaggccctaataaatggtttccagttgaatgaacagttcctggcattggtcccaaaga |
124 |
Q |
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| T |
37791818 |
ctaatggaagtggagaggatattcttggcgaaggaaatgaaacaggccctaataaatggtttccagttgaatgaacagttcctggcattggtaccaaaga |
37791917 |
T |
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| Q |
125 |
aaatggtggtctaggtgacattcctgcatgaggtggatgaatactgccaggtcgtggaatcatcaacatatttggctggggtggcttatattcaacatct |
224 |
Q |
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| T |
37791918 |
aaatggtggtctaggtgacattcctgcatgatgtggatgaatactgccaggtcgtggaatcatcaacatatttggctggggtgacttatattcaacatct |
37792017 |
T |
|
| Q |
225 |
ggttgtggaccgagagaaacaggtcttgtagggggaactgccggtgaagccatcggccccatattgctgagacctacagacattttaacattgacgggtc |
324 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37792018 |
ggttgtggaccgagagaaacaggtcttgtagggggaactgccggtgaagccatcggccccatattgctgagacctacagacattttaacattgacgggtc |
37792117 |
T |
|
| Q |
325 |
ctccacccagtccagtagatacgccgtgaggggttaatgactggttagctattggcgacggcgatataccagacaaaggttgaggcgttgaagagactga |
424 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37792118 |
ctccacccagtccagtagatacgccgtgaggggttaatggctggttagctattggtgacggcgatataccagacaaaggttgaggcgttgaagagactga |
37792217 |
T |
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| Q |
425 |
tgtctggag |
433 |
Q |
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||||||||| |
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| T |
37792218 |
tgtctggag |
37792226 |
T |
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