View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_155 (Length: 250)

Name: NF11069A_low_155
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_155
NF11069A_low_155
[»] chr5 (9 HSPs)
chr5 (7-230)||(26099226-26099449)
chr5 (172-221)||(25224814-25224863)
chr5 (172-221)||(25288970-25289019)
chr5 (28-116)||(25224928-25225016)
chr5 (28-116)||(25289084-25289172)
chr5 (28-116)||(25728232-25728320)
chr5 (172-221)||(25728385-25728434)
chr5 (34-107)||(25222582-25222655)
chr5 (34-107)||(25286738-25286811)
[»] chr1 (1 HSPs)
chr1 (28-116)||(25618044-25618132)


Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-99; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 7 - 230
Target Start/End: Original strand, 26099226 - 26099449
Alignment:
Q  7 tgttcatggccatggccttccgttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgc 106  Q
    ||||| ||||||||||| ||| |||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  26099226 tgttcgtggccatggccatccattacgggagtgaggagcagtttggcaaagacttcatctgtgtgaggatcaacaaggagatcaacggctgagatgatgc 26099325  T
Q  107 aggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgagttgagacatgttttaagtgaccttgtgggaagtagtaaactttagaatgtat 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||     
T  26099326 aggaaatggaaggaggataacaatgaagaagggtgatgattgtgtgaggggagacatgttttaagtgaccttgtgggaagtagtaaactttagaatgtag 26099425  T
Q  207 cttcggaatcttgaccgaggctcc 230  Q
    ||||||||||||||| ||||||||    
T  26099426 cttcggaatcttgactgaggctcc 26099449  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 25224863 - 25224814
Alignment:
Q  172 tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac 221  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||    
T  25224863 tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac 25224814  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 25289019 - 25288970
Alignment:
Q  172 tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac 221  Q
    |||||| |||||||||||||||||||||| || |||||||||||||||||    
T  25289019 tgacctcgtgggaagtagtaaactttagagtgaatcttcggaatcttgac 25288970  T

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Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 25225016 - 25224928
Alignment:
Q  28 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 116  Q
    ||||||||||| ||||| ||||||||||| || || || | |||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  25225016 gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 25224928  T

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Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 25289172 - 25289084
Alignment:
Q  28 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 116  Q
    ||||||||||| ||||| ||||||||||| || || || | |||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  25289172 gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 25289084  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 116
Target Start/End: Original strand, 25728232 - 25728320
Alignment:
Q  28 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 116  Q
    ||||||||||| ||||| ||||||||||| || || || | |||||||||||||| |||||||||||  |||| |||||| | ||||||    
T  25728232 gttacgggagtcaggagcagtttggcaaagacctcgtcggtgtgaggatcaacaaagagatcaacggaagagacgatgcatggaatgga 25728320  T

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Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 221
Target Start/End: Original strand, 25728385 - 25728434
Alignment:
Q  172 tgaccttgtgggaagtagtaaactttagaatgtatcttcggaatcttgac 221  Q
    |||||| |||||||||||||||||||||| || ||||| |||||||||||    
T  25728385 tgacctcgtgggaagtagtaaactttagagtgaatctttggaatcttgac 25728434  T

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Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 25222582 - 25222655
Alignment:
Q  34 ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca 107  Q
    ||||||||||| |||||||| ||||| || || | | ||| |||||||| ||||| ||||||||| ||||||||    
T  25222582 ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca 25222655  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 107
Target Start/End: Original strand, 25286738 - 25286811
Alignment:
Q  34 ggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgca 107  Q
    ||||||||||| |||||||| ||||| || || | | ||| |||||||| ||||| ||||||||| ||||||||    
T  25286738 ggagtgaggagcagtttggcgaaaacctcgtcagtgagagcatcaacaaagagattaacggctgaaatgatgca 25286811  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 116
Target Start/End: Complemental strand, 25618132 - 25618044
Alignment:
Q  28 gttacgggagtgaggaggagtttggcaaaaacttcatctgcgtgaggatcaacaaggagatcaacggctgagatgatgcaggaaatgga 116  Q
    ||||||||||||||||| |||||||| || |||||||| | || ||||||| |||||||||| ||||  ||||||||||| | ||||||    
T  25618132 gttacgggagtgaggagcagtttggcgaagacttcatcagtgtaaggatcagcaaggagatcgacggtggagatgatgcacggaatgga 25618044  T

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