View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_16 (Length: 450)
Name: NF11069A_low_16
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 6e-81; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26665345 - 26665126
Alignment:
| Q |
1 |
gagagtgaagagtaacatgttatagcaaaacagactagtgtttgtgtgaaagtgaaagnnnnnnnnncagaacagtggcgttgaaatggaagatccatta |
100 |
Q |
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| T |
26665345 |
gagagtgaagagtaacatgttataacaaaacagactagtgtttgcgtgaaagtgaaagaaaaagaa-cagaacagtgtcgttgaaatggaagatccatta |
26665247 |
T |
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| Q |
101 |
caatctcttgattctgtaacattttcttcttcagttcccagacatgccattctttctgcattttgctcttacattggtcatcgttgcatattattcattc |
200 |
Q |
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| T |
26665246 |
caatctcgtgattctgtaacattttcttcttcaggtaccagacgtgccattctttctgcattttgctcttacattgttcatggttgcatattattcattc |
26665147 |
T |
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| Q |
201 |
attcttccgaaatgttacgta |
221 |
Q |
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| T |
26665146 |
attcttccgaaatgttacgta |
26665126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 279 - 450
Target Start/End: Complemental strand, 26665068 - 26664897
Alignment:
| Q |
279 |
caggcagggatgagaatagaagagaaaggagatctgattttaagaagaagctgctcaatgcattttcaaagtttaagcattctttcaagaaaaagcgtgt |
378 |
Q |
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| T |
26665068 |
caggcagtgatgagaatagaaaagaaaggagatctgattttaagaagaaactgctcaatgcattttcaaagtttaagcattctttcaagaaaaagcgtgt |
26664969 |
T |
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| Q |
379 |
tgatgagttacaggctgttgatgttgttcctgctgttgttgatgcgtttcggaaatcgttgatcatggatga |
450 |
Q |
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| T |
26664968 |
tgatgagttacaggctgttaatgttgttcctgctgttgttgatgcgtttcggaaattgttgatcatggatga |
26664897 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 406 - 450
Target Start/End: Complemental strand, 26658777 - 26658733
Alignment:
| Q |
406 |
tcctgctgttgttgatgcgtttcggaaatcgttgatcatggatga |
450 |
Q |
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| T |
26658777 |
tcctgctgttgttgatgcctttcggaaatcgttgatcatggatga |
26658733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 403 - 450
Target Start/End: Complemental strand, 26644055 - 26644008
Alignment:
| Q |
403 |
tgttcctgctgttgttgatgcgtttcggaaatcgttgatcatggatga |
450 |
Q |
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| T |
26644055 |
tgttcctgctgctgttgatgcttttcggcaatcgttgatcatcgatga |
26644008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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