View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_164 (Length: 249)
Name: NF11069A_low_164
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_164 |
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| [»] chr5 (5 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 20 - 249
Target Start/End: Complemental strand, 38400974 - 38400745
Alignment:
| Q |
20 |
ttagaaaaagttaaattgcatacaaagaatagattttgtttctaatttcatttcttacatatgtaacttcttcacacaaatgaagaagttaaattgtata |
119 |
Q |
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| T |
38400974 |
ttagaaaaagttaaattgcatacgaagaatagattttgtttctaatttcatttcttacatctgtaacttcttcacacaaatgatgaagttaaattgcata |
38400875 |
T |
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| Q |
120 |
caaatagtaattttgctaaatttccattattaaagtaaatactcattccatttgcaggttgggttgattctgggtgtttcatttgagctaaaatcattgg |
219 |
Q |
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| T |
38400874 |
caaatagtaattttggtaaatttccattattaaacacaatactcattccatttgcaggttgggttgattctaggtgtttcatttgagctaaaatcattgg |
38400775 |
T |
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| Q |
220 |
aagcatacatgggcaagttgtttccatatg |
249 |
Q |
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| T |
38400774 |
aagcatacatgggcaagttgtttccatatg |
38400745 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 111
Target Start/End: Complemental strand, 38383543 - 38383449
Alignment:
| Q |
17 |
ttattagaaaaagttaaattgcatacaaagaatagattttgtttctaatttcatttcttacatatgtaacttcttcacacaaatgaagaagttaa |
111 |
Q |
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| T |
38383543 |
ttataagaaaaagttaaattgcattcaaagaatatattttgtttctaatttcatttcttccataggtaacttcttcacataaatcaagaagttaa |
38383449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 38392248 - 38392156
Alignment:
| Q |
157 |
aatactcattccatttgcaggttgggttgattctgggtgtttcatttgagctaaaatcattggaagcatacatgggcaagttgtttccatatg |
249 |
Q |
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| T |
38392248 |
aatactcattccatttgcaggctgggttgattctaggtgtctcatttgagctaaaaccattagacacatacatgggcaagatatttccatatg |
38392156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 17 - 85
Target Start/End: Complemental strand, 38392401 - 38392333
Alignment:
| Q |
17 |
ttattagaaaaagttaaattgcatacaaagaatagattttgtttctaatttcatttcttacatatgtaa |
85 |
Q |
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| T |
38392401 |
ttattagaaaaagttaaattgcatataaaaaatagattttgtttctaatttcatttcttccatctgtaa |
38392333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 157 - 249
Target Start/End: Complemental strand, 38383390 - 38383298
Alignment:
| Q |
157 |
aatactcattccatttgcaggttgggttgattctgggtgtttcatttgagctaaaatcattggaagcatacatgggcaagttgtttccatatg |
249 |
Q |
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| T |
38383390 |
aatactcatttcatttgtaggctgggttgattctaggtgtctcgtttgagctaaaaccaatggacacatacatggacaagttatttccatatg |
38383298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 37838869 - 37838920
Alignment:
| Q |
24 |
aaaaagttaaattgcatacaaagaatagattttgtttctaatttcatttctt |
75 |
Q |
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| T |
37838869 |
aaaaagttaaattgcatacaaaaaatagattttgtttctaatttcatttctt |
37838920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 162 - 249
Target Start/End: Original strand, 37839252 - 37839339
Alignment:
| Q |
162 |
tcattccatttgcaggttgggttgattctgggtgtttcatttgagctaaaatcattggaagcatacatgggcaagttgtttccatatg |
249 |
Q |
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| T |
37839252 |
tcattccatttgcaggctgggttgattctaggtatctcatttgagctaaaaccattggacacatacatgaacaagttttttccatatg |
37839339 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 37844428 - 37844496
Alignment:
| Q |
17 |
ttattagaaaaagttaaattgcatacaaagaatagattttgtttctaatttcatttcttacatatgtaa |
85 |
Q |
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| T |
37844428 |
ttattagataaagttaaattgcatatagaaaatagattttgtttctaatatcatttcttccatgtgtaa |
37844496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 214 - 249
Target Start/End: Original strand, 37844915 - 37844950
Alignment:
| Q |
214 |
cattggaagcatacatgggcaagttgtttccatatg |
249 |
Q |
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| T |
37844915 |
cattggacgcatacatgggcaagttgtttccatatg |
37844950 |
T |
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