View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_173 (Length: 246)

Name: NF11069A_low_173
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_173
NF11069A_low_173
[»] chr5 (25 HSPs)
chr5 (1-212)||(6326109-6326320)
chr5 (68-232)||(6316825-6316988)
chr5 (99-216)||(6306905-6307022)
chr5 (19-69)||(43564951-43565001)
chr5 (1-69)||(6247658-6247730)
chr5 (26-69)||(14873599-14873642)
chr5 (19-68)||(21576685-21576734)
chr5 (34-74)||(10298635-10298675)
chr5 (20-68)||(19820328-19820376)
chr5 (19-66)||(21190998-21191045)
chr5 (25-68)||(39698628-39698671)
chr5 (39-69)||(7218217-7218247)
chr5 (34-68)||(17123132-17123166)
chr5 (34-68)||(22423764-22423798)
chr5 (34-68)||(35017128-35017162)
chr5 (19-65)||(39268541-39268587)
chr5 (19-60)||(17088361-17088402)
chr5 (20-69)||(38464312-38464361)
chr5 (20-68)||(7677787-7677835)
chr5 (25-69)||(15086554-15086598)
chr5 (1-68)||(15884024-15884096)
chr5 (20-68)||(21194063-21194111)
chr5 (14-66)||(21351852-21351904)
chr5 (29-69)||(39758340-39758380)
chr5 (34-66)||(43001890-43001922)
[»] chr4 (30 HSPs)
chr4 (2-70)||(30094066-30094134)
chr4 (26-68)||(35157925-35157967)
chr4 (19-69)||(35161106-35161156)
chr4 (19-68)||(23292926-23292975)
chr4 (20-68)||(12708213-12708261)
chr4 (25-68)||(37203328-37203371)
chr4 (34-68)||(18844423-18844457)
chr4 (20-68)||(715545-715593)
chr4 (20-68)||(752871-752919)
chr4 (29-69)||(5775303-5775343)
chr4 (20-68)||(8423658-8423706)
chr4 (13-69)||(11596296-11596352)
chr4 (25-69)||(40784029-40784073)
chr4 (25-69)||(53381529-53381573)
chr4 (34-69)||(3064867-3064902)
chr4 (13-68)||(10499227-10499281)
chr4 (25-68)||(36635406-36635449)
chr4 (34-68)||(3144587-3144621)
chr4 (25-67)||(4383443-4383484)
chr4 (19-69)||(18513174-18513224)
chr4 (19-65)||(28084594-28084640)
chr4 (19-68)||(16886677-16886726)
chr4 (19-68)||(24343583-24343632)
chr4 (1-69)||(30298983-30299049)
chr4 (1-69)||(30327851-30327917)
chr4 (19-67)||(3947702-3947750)
chr4 (13-69)||(20633535-20633591)
chr4 (34-66)||(22440559-22440591)
chr4 (20-68)||(29205539-29205587)
chr4 (19-67)||(30982808-30982856)
[»] chr8 (22 HSPs)
chr8 (19-69)||(27213595-27213645)
chr8 (25-68)||(15816058-15816101)
chr8 (20-67)||(24205749-24205796)
chr8 (19-69)||(29510232-29510282)
chr8 (34-68)||(39820513-39820547)
chr8 (19-68)||(22652057-22652106)
chr8 (25-69)||(4673353-4673397)
chr8 (19-71)||(8343037-8343089)
chr8 (19-71)||(8343397-8343449)
chr8 (25-68)||(17751732-17751775)
chr8 (25-68)||(17760719-17760762)
chr8 (19-69)||(15131733-15131783)
chr8 (19-69)||(22197670-22197720)
chr8 (34-68)||(24413499-24413533)
chr8 (34-68)||(31514939-31514973)
chr8 (19-68)||(3951476-3951525)
chr8 (32-65)||(24727684-24727717)
chr8 (19-68)||(36450694-36450743)
chr8 (20-68)||(6065586-6065634)
chr8 (20-68)||(11803341-11803389)
chr8 (26-66)||(16987990-16988030)
chr8 (19-67)||(29447040-29447088)
[»] chr1 (34 HSPs)
chr1 (1-68)||(35702542-35702611)
chr1 (18-69)||(29144319-29144370)
chr1 (19-69)||(46940747-46940797)
chr1 (13-66)||(25452108-25452161)
chr1 (25-70)||(31694637-31694682)
chr1 (25-68)||(18556385-18556428)
chr1 (19-66)||(42359391-42359438)
chr1 (19-69)||(9828125-9828175)
chr1 (19-69)||(40917830-40917880)
chr1 (32-69)||(13436526-13436563)
chr1 (1-69)||(22881566-22881639)
chr1 (19-68)||(32461393-32461442)
chr1 (13-69)||(2288124-2288180)
chr1 (25-69)||(21365991-21366035)
chr1 (25-69)||(22947806-22947850)
chr1 (34-70)||(37598916-37598952)
chr1 (13-69)||(42325623-42325679)
chr1 (20-68)||(47989579-47989627)
chr1 (19-66)||(1486646-1486693)
chr1 (19-66)||(16297223-16297270)
chr1 (19-66)||(17778623-17778670)
chr1 (25-68)||(22515827-22515870)
chr1 (19-66)||(23705422-23705469)
chr1 (25-68)||(27965940-27965983)
chr1 (18-69)||(48632322-48632373)
chr1 (19-69)||(6427545-6427595)
chr1 (19-69)||(15765828-15765878)
chr1 (18-68)||(48450550-48450599)
chr1 (33-66)||(23622391-23622424)
chr1 (20-68)||(5944365-5944413)
chr1 (25-69)||(7918153-7918197)
chr1 (28-68)||(16812635-16812675)
chr1 (20-68)||(32899962-32900010)
chr1 (34-70)||(34741931-34741967)
[»] scaffold0003 (1 HSPs)
scaffold0003 (19-68)||(241675-241724)
[»] chr7 (19 HSPs)
chr7 (19-68)||(598278-598327)
chr7 (1-68)||(28155606-28155673)
chr7 (19-69)||(5409770-5409820)
chr7 (20-68)||(21880223-21880271)
chr7 (13-68)||(6490780-6490835)
chr7 (19-69)||(9778575-9778625)
chr7 (34-68)||(29812598-29812632)
chr7 (19-68)||(30813867-30813916)
chr7 (18-67)||(32287404-32287453)
chr7 (19-68)||(43027404-43027453)
chr7 (19-63)||(13770766-13770810)
chr7 (21-69)||(35862023-35862071)
chr7 (25-68)||(24339729-24339772)
chr7 (34-68)||(29763129-29763163)
chr7 (19-68)||(1433529-1433578)
chr7 (19-68)||(10230024-10230073)
chr7 (30-67)||(18035806-18035843)
chr7 (25-65)||(8842282-8842322)
chr7 (20-64)||(40287306-40287350)
[»] chr6 (31 HSPs)
chr6 (19-65)||(9025448-9025494)
chr6 (1-68)||(7938152-7938219)
chr6 (19-69)||(17327589-17327639)
chr6 (20-69)||(12868615-12868664)
chr6 (19-68)||(34595204-34595253)
chr6 (25-69)||(28715371-28715415)
chr6 (19-67)||(31959220-31959268)
chr6 (28-68)||(32839571-32839611)
chr6 (34-69)||(4878027-4878062)
chr6 (25-68)||(7378055-7378098)
chr6 (33-68)||(7723199-7723234)
chr6 (1-67)||(1700388-1700454)
chr6 (34-68)||(6389817-6389851)
chr6 (19-69)||(8365447-8365497)
chr6 (19-65)||(8389411-8389457)
chr6 (19-69)||(8776907-8776957)
chr6 (18-68)||(19294694-19294744)
chr6 (13-59)||(21395262-21395308)
chr6 (26-68)||(21424744-21424786)
chr6 (25-66)||(5569825-5569866)
chr6 (19-68)||(7248439-7248488)
chr6 (19-68)||(7625186-7625235)
chr6 (19-68)||(9107299-9107348)
chr6 (19-67)||(9658949-9658998)
chr6 (20-69)||(10339053-10339102)
chr6 (19-68)||(16766778-16766827)
chr6 (34-67)||(17841530-17841563)
chr6 (19-68)||(28152168-28152217)
chr6 (26-67)||(31385007-31385048)
chr6 (13-49)||(21924910-21924946)
chr6 (20-68)||(32511606-32511654)
[»] chr3 (25 HSPs)
chr3 (19-69)||(41961578-41961628)
chr3 (19-68)||(34185052-34185101)
chr3 (20-68)||(20503536-20503584)
chr3 (25-69)||(49651715-49651759)
chr3 (20-67)||(8789489-8789536)
chr3 (19-69)||(27903708-27903758)
chr3 (19-69)||(40052382-40052432)
chr3 (1-42)||(10268468-10268509)
chr3 (19-68)||(27505321-27505370)
chr3 (20-69)||(40993274-40993323)
chr3 (19-68)||(55401145-55401194)
chr3 (25-69)||(14979225-14979269)
chr3 (19-66)||(4987222-4987269)
chr3 (34-68)||(4990912-4990946)
chr3 (34-68)||(8842414-8842448)
chr3 (30-68)||(11252057-11252095)
chr3 (25-67)||(14216979-14217021)
chr3 (25-67)||(14223108-14223150)
chr3 (25-67)||(34910393-34910435)
chr3 (18-63)||(1509636-1509681)
chr3 (19-68)||(11610579-11610628)
chr3 (39-68)||(17276817-17276846)
chr3 (25-66)||(29508526-29508567)
chr3 (19-67)||(15999951-15999999)
chr3 (13-65)||(21367330-21367382)
[»] chr2 (19 HSPs)
chr2 (19-69)||(37419824-37419874)
chr2 (20-63)||(23058389-23058432)
chr2 (20-66)||(2438661-2438707)
chr2 (19-68)||(26769592-26769641)
chr2 (19-68)||(37559047-37559096)
chr2 (19-68)||(38117099-38117148)
chr2 (20-68)||(11223793-11223841)
chr2 (20-68)||(18840953-18841001)
chr2 (25-69)||(29176367-29176411)
chr2 (19-66)||(19942335-19942382)
chr2 (34-68)||(18420363-18420397)
chr2 (19-69)||(32200609-32200659)
chr2 (19-69)||(34006929-34006979)
chr2 (19-68)||(10535685-10535734)
chr2 (19-56)||(14996171-14996208)
chr2 (19-68)||(35056949-35056998)
chr2 (19-68)||(42511322-42511371)
chr2 (1-66)||(42832234-42832299)
chr2 (19-67)||(17651633-17651681)
[»] scaffold0086 (1 HSPs)
scaffold0086 (25-68)||(3015-3058)
[»] scaffold0004 (1 HSPs)
scaffold0004 (20-67)||(92893-92940)
[»] scaffold0475 (1 HSPs)
scaffold0475 (24-69)||(3383-3428)
[»] scaffold0793 (1 HSPs)
scaffold0793 (20-68)||(4821-4869)
[»] scaffold0652 (1 HSPs)
scaffold0652 (19-67)||(403-451)
[»] scaffold0168 (2 HSPs)
scaffold0168 (34-69)||(21115-21150)
scaffold0168 (34-69)||(21373-21408)
[»] scaffold0027 (1 HSPs)
scaffold0027 (34-68)||(46742-46776)
[»] scaffold0019 (1 HSPs)
scaffold0019 (19-69)||(71806-71856)
[»] scaffold0450 (1 HSPs)
scaffold0450 (19-68)||(8564-8613)
[»] scaffold0136 (1 HSPs)
scaffold0136 (34-70)||(3776-3812)


Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 6326320 - 6326109
Alignment:
Q  1 gtgtaattacgagtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcataggggtatcaaacacctcccgcaggttcttggtg 100  Q
    |||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6326320 gtgtaattacaagtgtcagcgtcggacaccggaacacgcctaattcgagaagtgtccgtgcttcataggggtatcaaacacctcctgcaggttcttggtg 6326221  T
Q  101 aaatgcataccattgcatctttccagcaccgacacctgaagatacaaagtattgtttgtgtcctaagaatactcggtaccttcaaccaaagaagttcaag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6326220 aaatgcataccattgcatctttccagcaccgacacctgaagatacaaagtattgtttgtgtcctaagaatactcggtaccttcaaccaaagaagttcaag 6326121  T
Q  201 cgagcttctcaa 212  Q
     |||||||||||    
T  6326120 tgagcttctcaa 6326109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 68 - 232
Target Start/End: Complemental strand, 6316988 - 6316825
Alignment:
Q  68 ggggtatcaaacacctcccgcaggttcttggtgaaatgcataccattgcatctttccagcaccgacacctgaagatacaaagtattgtttgtgtcctaag 167  Q
    |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||    
T  6316988 ggggtatcaa-cacctcctgcaggttcttggtgaaatgcataccattgcatctttccagcaccgacgtctgaagatacaaagtattgtttgtgtcctaag 6316890  T
Q  168 aatactcggtaccttcaaccaaagaagttcaagcgagcttctcaacatgacatgataaaatgatg 232  Q
    ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6316889 aatacccggtaccttcaaccaaagaagttcaagtgagcttctcaacatgacatgataaaatgatg 6316825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 99 - 216
Target Start/End: Complemental strand, 6307022 - 6306905
Alignment:
Q  99 tgaaatgcataccattgcatctttccagcaccgacacctgaagatacaaagtattgtttgtgtcctaagaatactcggtaccttcaaccaaagaagttca 198  Q
    ||||||||||||||||||||||||||| ||||  || | ||||||||| ||||||||||| ||||||||||| || ||||||||| ||||| ||||||||    
T  6307022 tgaaatgcataccattgcatctttccaacaccatcatcggaagatacagagtattgtttgagtcctaagaatccttggtaccttccaccaatgaagttca 6306923  T
Q  199 agcgagcttctcaacatg 216  Q
    |  |||||| ||||||||    
T  6306922 aatgagcttttcaacatg 6306905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 43564951 - 43565001
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| ||| |||| ||||||||||||||||||||||||||||||||||||    
T  43564951 gtgtccgacgccgggacacgcctaatccgagaagtgtccgtgcttcatagg 43565001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 6247658 - 6247730
Alignment:
Q  1 gtgtaattacgagtgtcagtgtcggacac----cggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||| |||||| |||||||||||    ||| |||| |||||||||||||||||| ||||||||||||    
T  6247658 gtgtaattacaagtgtcggtgtcggacacggcacgggacacacctaatccgagaagtgtctgtgcttcatagg 6247730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 14873599 - 14873642
Alignment:
Q  26 acaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||||| |||||||||||||||| |||||||||||||||||||    
T  14873599 acaccgggacacgcctaatccgaggagtgtccgtgcttcatagg 14873642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 21576734 - 21576685
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| ||||| || |||||||||||||||| ||||||||||||||||||    
T  21576734 gtgtctgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 21576685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 74
Target Start/End: Original strand, 10298635 - 10298675
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcataggggtat 74  Q
    |||||||||||||||| ||||||||||||||||||| ||||    
T  10298635 acacgcctaatccgaggagtgtccgtgcttcataggagtat 10298675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 19820376 - 19820328
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| |||||||| |||||||||||| ||| ||||||||||||||||||    
T  19820376 tgtccgacaccgggacacgcctaatcagaggagtgtccgtgcttcatag 19820328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 21191045 - 21190998
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    ||||| ||| |||| |||||||||||||||| ||||||||||||||||    
T  21191045 gtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 39698628 - 39698671
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||  |||||||||||||||| ||||||||||||||||||    
T  39698628 gacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 39698671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 69
Target Start/End: Complemental strand, 7218247 - 7218217
Alignment:
Q  39 cctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||||||||||||||||||||||||    
T  7218247 cctaatccgagaagtgtccgtgcttcatagg 7218217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 17123132 - 17123166
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||||| ||||||||||||||||||    
T  17123132 acacgcctaatccgaggagtgtccgtgcttcatag 17123166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 22423798 - 22423764
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||||| ||||||||||||||||||    
T  22423798 acacgcctaatccgaggagtgtccgtgcttcatag 22423764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 35017128 - 35017162
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||||| ||||||||||||||||||    
T  35017128 acacgcctaatccgaggagtgtccgtgcttcatag 35017162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 39268587 - 39268541
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttca 65  Q
    ||||| ||||| || |||||||||||||||| |||||||||||||||    
T  39268587 gtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 39268541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 17088361 - 17088402
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtg 60  Q
    ||||| |||||||| |||||||||||||||| ||||||||||    
T  17088361 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtg 17088402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 38464361 - 38464312
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||| |||||||| |||| ||||||||||| |||||| ||||||||||||    
T  38464361 tgtccgacaccgggacacacctaatccgaggagtgtctgtgcttcatagg 38464312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 7677787 - 7677835
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| |||||||| |||||||||||||||| || ||| |||||||||||    
T  7677787 tgtccgacaccgggacacgcctaatccgaggagagtcggtgcttcatag 7677835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 15086554 - 15086598
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||| |||||||||||||||||||| ||||||  |||||||||||    
T  15086554 gacatcggaacacgcctaatccgaggagtgtctttgcttcatagg 15086598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 15884024 - 15884096
Alignment:
Q  1 gtgtaattacgagtgtcagtgtcggacacc-----ggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||| |||||| |||||||||||      ||||||||||||||||||| |||||| ||| |||||||    
T  15884024 gtgtaattacaagtgtcggtgtcggacacgacactggaacacgcctaatccgaggagtgtctgtgtttcatag 15884096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 21194111 - 21194063
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| ||||||||  ||||||||||||||| ||||||||||||| ||||    
T  21194111 tgtcagacaccggggcacgcctaatccgaggagtgtccgtgctttatag 21194063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 21351904 - 21351852
Alignment:
Q  14 tgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    |||| ||||| ||||| |||||||| |||||||||  ||||||||||||||||    
T  21351904 tgtcggtgtccgacactggaacacgtctaatccgaagagtgtccgtgcttcat 21351852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 39758340 - 39758380
Alignment:
Q  29 ccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||||||||||| ||||||| ||||||| |||||||||||    
T  39758340 ccggaacacgccttatccgaggagtgtccatgcttcatagg 39758380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Original strand, 43001890 - 43001922
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcat 66  Q
    |||||||||||||||| ||||||||||||||||    
T  43001890 acacgcctaatccgaggagtgtccgtgcttcat 43001922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 30094066 - 30094134
Alignment:
Q  2 tgtaattacgagtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcataggg 70  Q
    ||||||||| |||||| |||||||||||||| |||||||||||||||  |||||||||||| |||||||    
T  30094066 tgtaattacaagtgtcggtgtcggacaccgggacacgcctaatccgaagagtgtccgtgctacataggg 30094134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 35157967 - 35157925
Alignment:
Q  26 acaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||| ||||||||||||||||||||||||||||    
T  35157967 acaccggaacacgcttaatccgagaagtgtccgtgcttcatag 35157925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 35161106 - 35161156
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| ||||||||||||| |||||||||| ||||||||||||||||||||    
T  35161106 gtgtccgacaccggaacacacctaatccgaaaagtgtccgtgcttcatagg 35161156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 23292975 - 23292926
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  23292975 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 23292926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 12708213 - 12708261
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||||||| |||||||||||||||||||| || |||||||||||||||    
T  12708213 tgtcggacatcggaacacgcctaatccgaggagcgtccgtgcttcatag 12708261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 37203328 - 37203371
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||| ||||| |||||||||||||||||||||||||||||    
T  37203328 gacaccgggacacgtctaatccgagaagtgtccgtgcttcatag 37203371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 18844457 - 18844423
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||||||||||||||||||||||||    
T  18844457 acacgcctaatccgagaagtgtccgtgcttcatag 18844423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 715593 - 715545
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| ||||| || |||||||||||||||| ||||||||||||||||||    
T  715593 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 715545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 752919 - 752871
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| ||||| || |||||||||||||||| ||||||||||||||||||    
T  752919 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 752871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 69
Target Start/End: Complemental strand, 5775343 - 5775303
Alignment:
Q  29 ccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||| |||||||||||||||| |||||||||||||||||||    
T  5775343 ccgggacacgcctaatccgaggagtgtccgtgcttcatagg 5775303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 8423706 - 8423658
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| |||||||| |||||||||||| ||||||||||||||| ||||||    
T  8423706 tgtccgacaccgggacacgcctaatcggagaagtgtccgtgcgtcatag 8423658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 11596352 - 11596296
Alignment:
Q  13 gtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||| |||| |||| ||| |||||||||||| ||| |||||||||||||||||||    
T  11596352 gtgtcattgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatagg 11596296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 40784029 - 40784073
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||| |||| ||||||||||| |||||||||||||||||||    
T  40784029 gacaccgggacacacctaatccgaggagtgtccgtgcttcatagg 40784073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 53381573 - 53381529
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||| |||| ||||||||||| |||||||||||||||||||    
T  53381573 gacaccgggacacacctaatccgaggagtgtccgtgcttcatagg 53381529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Complemental strand, 3064902 - 3064867
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||||||||| |||||||||||||||||||    
T  3064902 acacgcctaatccgaggagtgtccgtgcttcatagg 3064867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 68
Target Start/End: Complemental strand, 10499281 - 10499227
Alignment:
Q  13 gtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||||||||||||| |||  |||||||||||||||| | ||||||||||||||||    
T  10499281 gtgtcagtgtcggac-ccgacacacgcctaatccgaggattgtccgtgcttcatag 10499227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 36635406 - 36635449
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||| |||||||||||||||  ||||||||||||||||||    
T  36635406 gacaccgggacacgcctaatccgaagagtgtccgtgcttcatag 36635449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 3144621 - 3144587
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| ||||||||||||||||||||||||||||||    
T  3144621 acacacctaatccgagaagtgtccgtgcttcatag 3144587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 4383443 - 4383484
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||||||| ||||||||||||||| |||||||||||||||||    
T  4383443 gacaccgga-cacgcctaatccgaggagtgtccgtgcttcata 4383484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 18513224 - 18513174
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| |||||| | |||||||||||| ||| |||||||||||||||||||    
T  18513224 gtgtccgacaccaggacacgcctaatctgaggagtgtccgtgcttcatagg 18513174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Original strand, 28084594 - 28084640
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttca 65  Q
    ||||| ||||| || |||||||||||||||| |||||||||||||||    
T  28084594 gtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttca 28084640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 16886677 - 16886726
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||||||||| ||||||  |||||||||||||||| ||||    
T  16886677 gtgtccgacaccggaacacggctaatctcagaagtgtccgtgcttgatag 16886726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 24343583 - 24343632
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| ||||||||| || ||| ||||||||||||||||||    
T  24343583 gtgtccgacaccgggacacgcctattctgaggagtgtccgtgcttcatag 24343632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30298983 - 30299049
Alignment:
Q  1 gtgtaattacgagtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||| |||||| ||||||  |  ||| ||||| |||||||||| |||||||||||||||||||    
T  30298983 gtgtaattacaagtgtcggtgtcgtgc--cgggacacgtctaatccgaggagtgtccgtgcttcatagg 30299049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 30327851 - 30327917
Alignment:
Q  1 gtgtaattacgagtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||| |||||| ||||||  |  ||| ||||| |||||||||| |||||||||||||||||||    
T  30327851 gtgtaattacaagtgtcggtgtcgtgc--cgggacacgtctaatccgaggagtgtccgtgcttcatagg 30327917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 3947750 - 3947702
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||| |||||| | |||| ||||||||||| |||||||||||||||||    
T  3947750 gtgtccgacaccaggacacacctaatccgaggagtgtccgtgcttcata 3947702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 20633535 - 20633591
Alignment:
Q  13 gtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| ||||||||||||   ||||||||||||| || ||||| |||||||||||||    
T  20633535 gtgtcggtgtcggacaccaagacacgcctaatccaaggagtgttcgtgcttcatagg 20633591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 22440591 - 22440559
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcat 66  Q
    |||||||||||||||| ||||||||||||||||    
T  22440591 acacgcctaatccgaggagtgtccgtgcttcat 22440559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 29205539 - 29205587
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| ||||| || |||||||||||||||| ||||| ||||||||||||    
T  29205539 tgtccgacactgggacacgcctaatccgaggagtgttcgtgcttcatag 29205587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 30982856 - 30982808
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||| |||||||| ||||||||||||| |  |||||||||||||||||    
T  30982856 gtgtccgacaccgggacacgcctaatccaaagagtgtccgtgcttcata 30982808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 27213595 - 27213645
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||    
T  27213595 gtgtcggacaccgggacacggctaatccgagaagtgtccgtgcttcatagg 27213645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 15816101 - 15816058
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||| |||||||||||||||||||||||||||||||||||    
T  15816101 gacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 15816058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 24205796 - 24205749
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    |||| ||||||||||||||||||||||||| |||||||||| ||||||    
T  24205796 tgtctgacaccggaacacgcctaatccgaggagtgtccgtgtttcata 24205749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 29510282 - 29510232
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| |||||||| |||| ||||||||||| |||||||||||||||||||    
T  29510282 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatagg 29510232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 39820513 - 39820547
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||||||||||||||||||||||||    
T  39820513 acacgcctaatccgagaagtgtccgtgcttcatag 39820547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 22652057 - 22652106
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| ||||| |||||||||| ||||||||||||||||||    
T  22652057 gtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatag 22652106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 4673397 - 4673353
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||||||||||||||| || |||||| ||||||||||||    
T  4673397 gacaccggaacacgcctaatccaaggagtgtctgtgcttcatagg 4673353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 8343037 - 8343089
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagggg 71  Q
    ||||| |||||||| |||||||||||||||  |||||| ||||||||||||||    
T  8343037 gtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatagggg 8343089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Original strand, 8343397 - 8343449
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagggg 71  Q
    ||||| |||||||| |||||||||||||||  |||||| ||||||||||||||    
T  8343397 gtgtccgacaccgggacacgcctaatccgaagagtgtctgtgcttcatagggg 8343449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 17751732 - 17751775
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||| |||||||||||||||| |||||||| |||||||||    
T  17751732 gacaccgggacacgcctaatccgaggagtgtccgcgcttcatag 17751775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 17760719 - 17760762
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||| |||||||||||||||| |||||||| |||||||||    
T  17760719 gacaccgggacacgcctaatccgaggagtgtccgcgcttcatag 17760762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 15131783 - 15131733
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||||||  ||||||||| ||| ||| ||||||||||||||||||    
T  15131783 gtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatagg 15131733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 22197720 - 22197670
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| ||||||||| ||||||||||| ||| ||||||||||||| |||||    
T  22197720 gtgtccgacaccggatcacgcctaatctgaggagtgtccgtgctttatagg 22197670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 24413533 - 24413499
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||||||||||||||||||||||||    
T  24413533 acacgtctaatccgagaagtgtccgtgcttcatag 24413499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 31514939 - 31514973
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||||| ||||||||||||||||||    
T  31514939 acacgcctaatccgaggagtgtccgtgcttcatag 31514973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 3951525 - 3951476
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| ||||| |||||||||||||||| || ||| ||||||||||||||    
T  3951525 gtgtctgacacgggaacacgcctaatccaaggagtttccgtgcttcatag 3951476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 32 - 65
Target Start/End: Complemental strand, 24727717 - 24727684
Alignment:
Q  32 gaacacgcctaatccgagaagtgtccgtgcttca 65  Q
    |||||||||||||||||||||||| |||||||||    
T  24727717 gaacacgcctaatccgagaagtgttcgtgcttca 24727684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 36450743 - 36450694
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||| | |||||||||||||||| |||||| |||||||||||    
T  36450743 gtgtccgacaccaggacacgcctaatccgaggagtgtctgtgcttcatag 36450694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 6065634 - 6065586
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| ||||||||||||||| |||| | || ||||||||||||||||||    
T  6065634 tgtccgacaccggaacacgcataattcaaggagtgtccgtgcttcatag 6065586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 11803341 - 11803389
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| ||||| || ||||| |||||||||| ||||||||||||||||||    
T  11803341 tgtccgacacaggtacacgtctaatccgaggagtgtccgtgcttcatag 11803389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 16987990 - 16988030
Alignment:
Q  26 acaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    ||||||| |||| ||||||||||| ||||||||||||||||    
T  16987990 acaccgggacacccctaatccgaggagtgtccgtgcttcat 16988030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 29447088 - 29447040
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||| |||||| | ||||||||||||| || |||||||||||||||||    
T  29447088 gtgtctgacaccaggacacgcctaatcctaggagtgtccgtgcttcata 29447040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 35702611 - 35702542
Alignment:
Q  1 gtgtaattacgagtgtcagtgtcggacacc--ggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||| ||||||||||||||||||   || |||||||||||||||| ||||||||||||||||||    
T  35702611 gtgtaattacaagtgtcagtgtcggacacgatgggacacgcctaatccgaggagtgtccgtgcttcatag 35702542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 29144370 - 29144319
Alignment:
Q  18 agtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||| ||||||||||||||||||||||||  |||||||||||||||||||    
T  29144370 agtgtccgacaccggaacacgcctaatccgaagagtgtccgtgcttcatagg 29144319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 46940797 - 46940747
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||||||||||    
T  46940797 gtgtccgacaccggaacacgcctaatccgaggagtgttcgtgcttcatagg 46940747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 25452161 - 25452108
Alignment:
Q  13 gtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    ||||| ||||| |||||||||||||||||||| |||| ||||||||||||||||    
T  25452161 gtgtcggtgtcagacaccggaacacgcctaattcgagcagtgtccgtgcttcat 25452108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 31694682 - 31694637
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcataggg 70  Q
    ||||||||||||||||||||| ||| ||||||||||||||||||||    
T  31694682 gacaccggaacacgcctaatctgaggagtgtccgtgcttcataggg 31694637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 18556428 - 18556385
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| || |||||||||||||||||||||||||||||||||||    
T  18556428 gacactgggacacgcctaatccgagaagtgtccgtgcttcatag 18556385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 42359438 - 42359391
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||    
T  42359438 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 42359391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 9828125 - 9828175
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| |||||||| ||||| |||||||||| |||||||||||||||||||    
T  9828125 gtgtccgacaccgggacacgtctaatccgaggagtgtccgtgcttcatagg 9828175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 40917830 - 40917880
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| |||||||| |||||||||||||||| | |||||||||||||||||    
T  40917830 gtgtccgacaccgggacacgcctaatccgaggactgtccgtgcttcatagg 40917880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 69
Target Start/End: Original strand, 13436526 - 13436563
Alignment:
Q  32 gaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  13436526 gaacacgactaatccgagaagtgtccgtgcttcatagg 13436563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 22881639 - 22881566
Alignment:
Q  1 gtgtaattacgagtgtcagtgtcggacac-----cggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||| |||||| |||||||||||     ||| ||||| |||||||||| |||||||||||||||||||    
T  22881639 gtgtaattacaagtgtcggtgtcggacacgacaccgggacacgtctaatccgaggagtgtccgtgcttcatagg 22881566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 32461442 - 32461393
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| ||||| || ||||||||||||| |||||||||||||||||||||    
T  32461442 gtgtctgacactgggacacgcctaatccaagaagtgtccgtgcttcatag 32461393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Complemental strand, 2288180 - 2288124
Alignment:
Q  13 gtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| |||||||||||| || ||||||||||||||| | |||| ||||||||||||    
T  2288180 gtgtcggtgtcggacacctgagcacgcctaatccgaggaatgtcagtgcttcatagg 2288124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 21366035 - 21365991
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||  |||||||||||||||| |||||||||||||||||||    
T  21366035 gacaccgagacacgcctaatccgaggagtgtccgtgcttcatagg 21365991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 22947806 - 22947850
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||| | |||||||||||||||| |||||||||||||||||||    
T  22947806 gacacctggacacgcctaatccgaggagtgtccgtgcttcatagg 22947850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 37598916 - 37598952
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcataggg 70  Q
    |||||||||||||||| ||||||||||||||||||||    
T  37598916 acacgcctaatccgaggagtgtccgtgcttcataggg 37598952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 69
Target Start/End: Original strand, 42325623 - 42325679
Alignment:
Q  13 gtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||||||||| ||| |||| |||||| |||| |||||| ||||||||||||    
T  42325623 gtgtcagtgtcggacatcgggacacacctaattcgaggagtgtctgtgcttcatagg 42325679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 47989579 - 47989627
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| |||| ||| |||||||||||||||| ||||||||||||||||||    
T  47989579 tgtctgacatcgggacacgcctaatccgaggagtgtccgtgcttcatag 47989627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 1486693 - 1486646
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    ||||| |||||||| |||||||||||||||| |||||| |||||||||    
T  1486693 gtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 16297270 - 16297223
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    ||||| |||||| | |||||||||||||||| ||||||||||||||||    
T  16297270 gtgtccgacaccaggacacgcctaatccgaggagtgtccgtgcttcat 16297223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 17778623 - 17778670
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    ||||| |||||||| ||| |||||||||||||||||| ||||||||||    
T  17778623 gtgtccgacaccgggacatgcctaatccgagaagtgttcgtgcttcat 17778670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 22515870 - 22515827
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||  |||||||||||||||| ||||||||||||||||||    
T  22515870 gacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 22515827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 23705469 - 23705422
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    ||||||||||||| ||||| |||||||||||||||||  |||||||||    
T  23705469 gtgtcggacaccgcaacacacctaatccgagaagtgtatgtgcttcat 23705422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Complemental strand, 27965983 - 27965940
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||| |||||||||||||||| ||||||| ||||||||||    
T  27965983 gacaccgggacacgcctaatccgaggagtgtccatgcttcatag 27965940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 48632373 - 48632322
Alignment:
Q  18 agtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||||||||||||  ||||||||| ||| ||| ||||||||||||||||||    
T  48632373 agtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatagg 48632322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 6427545 - 6427595
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| |||||||| |||||||||||| ||  |||||||||||||||||||    
T  6427545 gtgtccgacaccgggacacgcctaatctgatgagtgtccgtgcttcatagg 6427595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 15765828 - 15765878
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| ||||| || |||||||||||||||  |||||||||||||||||||    
T  15765828 gtgtctgacactgggacacgcctaatccgaagagtgtccgtgcttcatagg 15765878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 48450599 - 48450550
Alignment:
Q  18 agtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||| ||| |||| |||||||||| ||||||||||||||||||    
T  48450599 agtgtcggacacagga-cacgtctaatccgaggagtgtccgtgcttcatag 48450550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 33 - 66
Target Start/End: Original strand, 23622391 - 23622424
Alignment:
Q  33 aacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    |||||||||||||||||||||||| |||||||||    
T  23622391 aacacgcctaatccgagaagtgtcggtgcttcat 23622424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 5944365 - 5944413
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| |||||||| | |||||||||||||| ||||| ||||||||||||    
T  5944365 tgtccgacaccgggatacgcctaatccgaggagtgttcgtgcttcatag 5944413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 7918197 - 7918153
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||| | |||| ||||||||||| |||||||||||||||||||    
T  7918197 gacaccaggacacacctaatccgaggagtgtccgtgcttcatagg 7918153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 16812635 - 16812675
Alignment:
Q  28 accggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||||||| ||| ||||||||||||||||||    
T  16812635 accgggacacgcctaatctgaggagtgtccgtgcttcatag 16812675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 32899962 - 32900010
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||||||||||| |||| ||||||||||| | ||||| ||||||||||    
T  32899962 tgtcggacaccgggacacccctaatccgaggattgtccttgcttcatag 32900010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Original strand, 34741931 - 34741967
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcataggg 70  Q
    |||||||||||||||  ||||||||||||||||||||    
T  34741931 acacgcctaatccgaagagtgtccgtgcttcataggg 34741967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 241675 - 241724
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  241675 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 241724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 598278 - 598327
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  598278 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttcatag 598327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 28155606 - 28155673
Alignment:
Q  1 gtgtaattacgagtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||| |||||| |||||||||||| | ||||||||||||| || | ||||||||||||||||    
T  28155606 gtgtaattacaagtgtcggtgtcggacaccaggacacgcctaatccaaggaatgtccgtgcttcatag 28155673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 5409820 - 5409770
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| |||||||| |||||||||||||||| |||||||||||||||||||    
T  5409820 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagg 5409770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 21880223 - 21880271
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| |||||| | |||||||||||||||||||||||||||||||||||    
T  21880223 tgtccgacaccaggacacgcctaatccgagaagtgtccgtgcttcatag 21880271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 68
Target Start/End: Original strand, 6490780 - 6490835
Alignment:
Q  13 gtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| ||||| |||||||| |||||| ||||||||| ||||||||||||||||||    
T  6490780 gtgtcggtgtccgacaccgggacacgcttaatccgaggagtgtccgtgcttcatag 6490835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 9778575 - 9778625
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| |||||||| ||||||||||||| || |||||||||||||||||||    
T  9778575 gtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcttcatagg 9778625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 29812632 - 29812598
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||||||||||||||||||||||||    
T  29812632 acacgcctaatccgagaagtgtccgtgcttcatag 29812598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 30813867 - 30813916
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||| | |||||||||||||||||| ||||||||||||||||||    
T  30813867 gtgtccgacatcagaacacgcctaatccgaggagtgtccgtgcttcatag 30813916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Complemental strand, 32287453 - 32287404
Alignment:
Q  18 agtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    |||||| |||||||| |||| ||||||||||| |||||||||||||||||    
T  32287453 agtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 32287404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 43027453 - 43027404
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| |||||||||||||||  ||||||||||||||||||    
T  43027453 gtgtccgacaccgggacacgcctaatccgatgagtgtccgtgcttcatag 43027404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 13770766 - 13770810
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgctt 63  Q
    ||||| ||||||||||||||||||||||||  |||||||||||||    
T  13770766 gtgtccgacaccggaacacgcctaatccgaagagtgtccgtgctt 13770810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 69
Target Start/End: Original strand, 35862023 - 35862071
Alignment:
Q  21 gtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||  | |||||||||||||||| |||||||||||||||||||    
T  35862023 gtcggacacgaggacacgcctaatccgaggagtgtccgtgcttcatagg 35862071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 24339729 - 24339772
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||| |||||||||||||||| |||| |||||||||||||    
T  24339729 gacaccgggacacgcctaatccgaggagtgcccgtgcttcatag 24339772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 29763163 - 29763129
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||||| ||||||||||||||||||    
T  29763163 acacgcctaatccgaggagtgtccgtgcttcatag 29763129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 1433529 - 1433578
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||| | ||||| |||||||||| ||||||||||||||||||    
T  1433529 gtgtccgacaccaggacacgtctaatccgaggagtgtccgtgcttcatag 1433578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 10230073 - 10230024
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||| |||||||||| |||| || ||| ||||||||||||||    
T  10230073 gtgtcggacaccagaacacgcctgatccaaggagtttccgtgcttcatag 10230024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 18035843 - 18035806
Alignment:
Q  30 cggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  18035843 cggaacacgtctaatccgaggagtgtccgtgcttcata 18035806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 65
Target Start/End: Complemental strand, 8842322 - 8842282
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttca 65  Q
    |||||||| ||||||||||||| || |||||||||||||||    
T  8842322 gacaccgggacacgcctaatccaaggagtgtccgtgcttca 8842282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 64
Target Start/End: Complemental strand, 40287350 - 40287306
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttc 64  Q
    |||| |||||||| ||| |||||||||||| ||||||||||||||    
T  40287350 tgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttc 40287306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 31)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 9025494 - 9025448
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttca 65  Q
    ||||| |||||||| ||||||||||||||||||||||||||||||||    
T  9025494 gtgtccgacaccgggacacgcctaatccgagaagtgtccgtgcttca 9025448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 7938152 - 7938219
Alignment:
Q  1 gtgtaattacgagtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||  |||||| ||||| |||||||  |||||||| ||||||| ||||||||||||||||||    
T  7938152 gtgtaattataagtgtcggtgtccgacaccgagacacgcctgatccgaggagtgtccgtgcttcatag 7938219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 17327639 - 17327589
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| ||||| || |||||||||||||||| |||||||||||||||||||    
T  17327639 gtgtctgacacagggacacgcctaatccgaggagtgtccgtgcttcatagg 17327589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 12868664 - 12868615
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||| ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  12868664 tgtccgacacgggaacacgcctaatccgataagtgtcggtgcttcatagg 12868615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 34595204 - 34595253
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| |||| ||||||||||| ||||||||||||||||||    
T  34595204 gtgtctgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 34595253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 28715371 - 28715415
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||| ||||||||||| |||||||||| |||||||||||||    
T  28715371 gacaccgggacacgcctaattcgagaagtgtacgtgcttcatagg 28715415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 31959220 - 31959268
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||| |||||||| |||| ||||||||||| |||||||||||||||||    
T  31959220 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 31959268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 32839611 - 32839571
Alignment:
Q  28 accggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| ||||||||||||||||||||||| |||||||||||    
T  32839611 accgggacacgcctaatccgagaagtgtctgtgcttcatag 32839571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 4878027 - 4878062
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||||||||| |||||||||||||||||||    
T  4878027 acacgcctaatccgaggagtgtccgtgcttcatagg 4878062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 7378055 - 7378098
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||| ||||| |||||| ||||||||||||||||||||||    
T  7378055 gacaccgggacacggctaatctgagaagtgtccgtgcttcatag 7378098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 7723234 - 7723199
Alignment:
Q  33 aacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||||||||||||||| ||||||||||||||||||    
T  7723234 aacacgcctaatccgaggagtgtccgtgcttcatag 7723199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 1700388 - 1700454
Alignment:
Q  1 gtgtaattacgagtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    |||||||||  |||||| |||||||||||| ||| ||||||||| | || |||||||||| ||||||    
T  1700388 gtgtaattataagtgtcggtgtcggacaccagaatacgcctaattcaaggagtgtccgtgtttcata 1700454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 6389817 - 6389851
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| ||||||||||||||||||||||||||||||    
T  6389817 acactcctaatccgagaagtgtccgtgcttcatag 6389851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 8365497 - 8365447
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| ||||| || |||||||||||||||| ||| |||||||||||||||    
T  8365497 gtgtccgacactgggacacgcctaatccgaggagtctccgtgcttcatagg 8365447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 65
Target Start/End: Complemental strand, 8389457 - 8389411
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttca 65  Q
    ||||| |||||||| |||| ||||||||||| |||||||||||||||    
T  8389457 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttca 8389411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 8776957 - 8776907
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| |||||||  |||| ||||||||||| |||||||||||||||||||    
T  8776957 gtgtccgacaccgagacacacctaatccgaggagtgtccgtgcttcatagg 8776907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 19294694 - 19294744
Alignment:
Q  18 agtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||||||||||||  ||||||||||||| ||| ||||| |||||||||||    
T  19294694 agtgtcggacaccgcgacacgcctaatcctagaggtgtcggtgcttcatag 19294744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 21395308 - 21395262
Alignment:
Q  13 gtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgt 59  Q
    |||||||||||||||||| | ||||||||||||| || |||||||||    
T  21395308 gtgtcagtgtcggacaccaggacacgcctaatccaaggagtgtccgt 21395262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 68
Target Start/End: Complemental strand, 21424786 - 21424744
Alignment:
Q  26 acaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||| |||||| |||||| ||||||||||||||||||||||    
T  21424786 acaccgaaacacggctaatctgagaagtgtccgtgcttcatag 21424744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 5569825 - 5569866
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    |||||| |||||||||||||| ||| ||||||||||||||||    
T  5569825 gacacctgaacacgcctaatctgaggagtgtccgtgcttcat 5569866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 7248439 - 7248488
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| ||||| | |||||||| ||||||||||||||||||    
T  7248439 gtgtccgacaccgggacacgtcaaatccgaggagtgtccgtgcttcatag 7248488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 7625186 - 7625235
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| ||||||||||||||| |||||| || ||||| ||||||||||||    
T  7625186 gtgtccgacaccggaacacgcttaatccaaggagtgttcgtgcttcatag 7625235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 9107348 - 9107299
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| |||| ||||||||||| |||| |||||||||||||    
T  9107348 gtgtccgacaccgggacacacctaatccgaggagtgcccgtgcttcatag 9107299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 9658949 - 9658998
Alignment:
Q  19 gtgtcggacaccggaacacgcctaa-tccgagaagtgtccgtgcttcata 67  Q
    ||||| ||||||||||||||||||| ||| || |||||||||||||||||    
T  9658949 gtgtctgacaccggaacacgcctaattccaaggagtgtccgtgcttcata 9658998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 10339102 - 10339053
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||| ||||| || |||||||||||| ||| |||||||||||||||||||    
T  10339102 tgtccgacactgggacacgcctaatcggaggagtgtccgtgcttcatagg 10339053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 16766778 - 16766827
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| |||||||||||||||  | ||||||||||||||||    
T  16766778 gtgtccgacaccgggacacgcctaatccgaagaatgtccgtgcttcatag 16766827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 34 - 67
Target Start/End: Complemental strand, 17841563 - 17841530
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcata 67  Q
    |||||||||||||||| |||||||||||||||||    
T  17841563 acacgcctaatccgaggagtgtccgtgcttcata 17841530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 28152168 - 28152217
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| ||| |||||||||||| ||||| ||||||||||||    
T  28152168 gtgtccgacaccgggacaggcctaatccgaggagtgttcgtgcttcatag 28152217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 31385007 - 31385048
Alignment:
Q  26 acaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||||| ||||||||||||| || |||||||||||||||||    
T  31385007 acaccgggacacgcctaatccaaggagtgtccgtgcttcata 31385048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 21924946 - 21924910
Alignment:
Q  13 gtgtcagtgtcggacaccggaacacgcctaatccgag 49  Q
    ||||| |||||||||||||| ||||||||||||||||    
T  21924946 gtgtcggtgtcggacaccgggacacgcctaatccgag 21924910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 32511654 - 32511606
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| |||| |||| ||||||||||| ||| ||||||||||||||||||    
T  32511654 tgtctgacatcggagcacgcctaatcggaggagtgtccgtgcttcatag 32511606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 41961628 - 41961578
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  41961628 gtgtccgacactgggacacgcctaatccgagaagtgtccgtgcttcatagg 41961578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 34185101 - 34185052
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  34185101 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 34185052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 20503536 - 20503584
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||||    
T  20503536 tgtctgacaccgggacacgcctaatccgaggagtgtccgtgcttcatag 20503584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 49651759 - 49651715
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||| |||| |||||||||||||||||||||||||||||||    
T  49651759 gacaccgggacacacctaatccgagaagtgtccgtgcttcatagg 49651715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 8789536 - 8789489
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||||||||||  |||||||||||||||| |||||||||||||||||    
T  8789536 tgtcggacaccgagacacgcctaatccgaggagtgtccgtgcttcata 8789489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 27903708 - 27903758
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| ||||| ||| || ||||||||||||||||||||||||||||||||    
T  27903708 gtgtctgacactggatcatgcctaatccgagaagtgtccgtgcttcatagg 27903758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 40052382 - 40052432
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| |||||||| |||||||||||||||| ||||| |||||||||||||    
T  40052382 gtgtccgacaccgggacacgcctaatccgaggagtgttcgtgcttcatagg 40052432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 10268509 - 10268468
Alignment:
Q  1 gtgtaattacgagtgtcagtgtcggacaccggaacacgccta 42  Q
    |||||||||| |||||||||||| ||||||||||||||||||    
T  10268509 gtgtaattacaagtgtcagtgtcagacaccggaacacgccta 10268468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 27505321 - 27505370
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| ||| |||||||||||| ||||||||||||||||||    
T  27505321 gtgtccgacaccgggacatgcctaatccgaggagtgtccgtgcttcatag 27505370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 40993323 - 40993274
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||| |||||||| |||||||||||||||| ||||||| |||||||||||    
T  40993323 tgtccgacaccgggacacgcctaatccgaggagtgtccatgcttcatagg 40993274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 55401145 - 55401194
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||  |||||||||||||||| ||||||||||||||||||    
T  55401145 gtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Original strand, 14979225 - 14979269
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||| |||||||||| ||||| |||||||||||||||||||    
T  14979225 gacaccgggacacgcctaacccgaggagtgtccgtgcttcatagg 14979269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 4987269 - 4987222
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    ||||| |||||||| |||||||||||||||| ||||||||| ||||||    
T  4987269 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtacttcat 4987222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 4990946 - 4990912
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||||| ||||||||||||||||||    
T  4990946 acacgcctaatccgaggagtgtccgtgcttcatag 4990912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 8842414 - 8842448
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||||| ||||||||||||||||||    
T  8842414 acacgcctaatccgaggagtgtccgtgcttcatag 8842448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 11252057 - 11252095
Alignment:
Q  30 cggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  11252057 cggaacacgcctaatccgaggagtgtctgtgcttcatag 11252095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 14216979 - 14217021
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||| || |||| |||||||||||||||||||||||||||||    
T  14216979 gacactgggacacacctaatccgagaagtgtccgtgcttcata 14217021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 14223108 - 14223150
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||| || |||| |||||||||||||||||||||||||||||    
T  14223108 gacactgggacacacctaatccgagaagtgtccgtgcttcata 14223150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 67
Target Start/End: Original strand, 34910393 - 34910435
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    |||||||| ||||| |||||||||| |||||||||||||||||    
T  34910393 gacaccgggacacgtctaatccgaggagtgtccgtgcttcata 34910435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 1509636 - 1509681
Alignment:
Q  18 agtgtcggacaccggaacacgcctaatccgagaagtgtccgtgctt 63  Q
    |||||| |||||||| |||||||||||| ||| |||||||||||||    
T  1509636 agtgtccgacaccggtacacgcctaatcggaggagtgtccgtgctt 1509681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 11610579 - 11610628
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||| ||| |||||||||||| ||| ||||||||||||||||||    
T  11610579 gtgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11610628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 68
Target Start/End: Original strand, 17276817 - 17276846
Alignment:
Q  39 cctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||||||||||||||||||||||||||||    
T  17276817 cctaatccgagaagtgtccgtgcttcatag 17276846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 66
Target Start/End: Original strand, 29508526 - 29508567
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    |||||||| ||||| ||||||| |||||||||||||||||||    
T  29508526 gacaccgggacacgtctaatccaagaagtgtccgtgcttcat 29508567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 15999999 - 15999951
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||| |||||||| ||||||||||||| || ||||||||||| |||||    
T  15999999 gtgtccgacaccgggacacgcctaatccaaggagtgtccgtgcatcata 15999951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 21367330 - 21367382
Alignment:
Q  13 gtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttca 65  Q
    ||||| |||||||||||  | |||| |||||||||||||||||| ||||||||    
T  21367330 gtgtcggtgtcggacacttggacacacctaatccgagaagtgtctgtgcttca 21367382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 37419824 - 37419874
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| |||||||| |||||||||||||||| |||||||||||||||||||    
T  37419824 gtgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcatagg 37419874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 63
Target Start/End: Complemental strand, 23058432 - 23058389
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgctt 63  Q
    |||| |||||||| ||||||||||||||||||||||||||||||    
T  23058432 tgtccgacaccgggacacgcctaatccgagaagtgtccgtgctt 23058389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 2438707 - 2438661
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    |||| |||||||| |||||||||||||||| ||||||||||||||||    
T  2438707 tgtccgacaccgggacacgcctaatccgaggagtgtccgtgcttcat 2438661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 26769592 - 26769641
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| ||||| || |||||||||||||||| ||||||||||||||||||    
T  26769592 gtgtccgacactgggacacgcctaatccgaggagtgtccgtgcttcatag 26769641  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 37559047 - 37559096
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| |||||| ||||||||| ||||||||||||||||||    
T  37559047 gtgtccgacaccggtacacgcttaatccgaggagtgtccgtgcttcatag 37559096  T

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Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 38117148 - 38117099
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||||| ||||||||||||||||  |||||||||||||||||    
T  38117148 gtgtccgacaccgggacacgcctaatccgaggggtgtccgtgcttcatag 38117099  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 11223841 - 11223793
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| |||||||| |||||||||||| ||| ||||||||||||||||||    
T  11223841 tgtctgacaccgggacacgcctaatctgaggagtgtccgtgcttcatag 11223793  T

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Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 18841001 - 18840953
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| |||||||| |||| ||||||||||| ||||||||||||||||||    
T  18841001 tgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcatag 18840953  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 69
Target Start/End: Complemental strand, 29176411 - 29176367
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||||| ||||||||||||||||||||||| | |||||||||||    
T  29176411 gacaccgaaacacgcctaatccgagaagtgttcatgcttcatagg 29176367  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 19942335 - 19942382
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    ||||| |||||||| |||||||||||||||| ||||||| ||||||||    
T  19942335 gtgtctgacaccgggacacgcctaatccgaggagtgtccatgcttcat 19942382  T

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Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Complemental strand, 18420397 - 18420363
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||||||||||||||||||||| |||||||||||    
T  18420397 acacgcctaatccgagaagtgtctgtgcttcatag 18420363  T

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Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 32200659 - 32200609
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||||||  ||||||||| ||| ||| ||||||||||||||||||    
T  32200659 gtgtcggacaccgcgacacgcctagtcctagaggtgtccgtgcttcatagg 32200609  T

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Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Complemental strand, 34006979 - 34006929
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| ||||||||||||| |||||| | || |||||||||||||||||||    
T  34006979 gtgtctgacaccggaacacacctaattcaaggagtgtccgtgcttcatagg 34006929  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 10535734 - 10535685
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| |||||| | |||||||||||||||| ||||| ||||||||||||    
T  10535734 gtgtctgacaccaggacacgcctaatccgaggagtgttcgtgcttcatag 10535685  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 14996208 - 14996171
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtc 56  Q
    ||||| ||||||||||||||||||||||||| ||||||    
T  14996208 gtgtctgacaccggaacacgcctaatccgaggagtgtc 14996171  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Original strand, 35056949 - 35056998
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| ||||| | ||||||||||||| ||| ||||||||||||||||||    
T  35056949 gtgtccgacacggaaacacgcctaatctgaggagtgtccgtgcttcatag 35056998  T

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Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 42511371 - 42511322
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| ||||| || ||||| |||||||||| ||||||||||||||||||    
T  42511371 gtgtccgacacagggacacggctaatccgaggagtgtccgtgcttcatag 42511322  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42832299 - 42832234
Alignment:
Q  1 gtgtaattacgagtgtcagtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcat 66  Q
    |||||||||  |||||| ||||| ||| |||| ||||||||||||| || ||||||| ||||||||    
T  42832299 gtgtaattataagtgtcggtgtccgactccgggacacgcctaatccaaggagtgtccttgcttcat 42832234  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 17651633 - 17651681
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    |||||||||||||  ||||||||||||| | | ||||||||||||||||    
T  17651633 gtgtcggacaccgcgacacgcctaatcctaaaggtgtccgtgcttcata 17651681  T

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Target: scaffold0086 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 25 - 68
Target Start/End: Original strand, 3015 - 3058
Alignment:
Q  25 gacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||||||||||||||||||||||| |||||||||||| |||||    
T  3015 gacaccggaacacgcctaatccgaggagtgtccgtgctccatag 3058  T

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Target: scaffold0004 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 67
Target Start/End: Original strand, 92893 - 92940
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||||||||| | |||||||||||||||| |||||||||||||||||    
T  92893 tgtcggacacctggacacgcctaatccgaggagtgtccgtgcttcata 92940  T

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Target: scaffold0475 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 3383 - 3428
Alignment:
Q  24 ggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||| || |||||||||||||||| |||||||||||||||||||    
T  3383 ggacactgggacacgcctaatccgaggagtgtccgtgcttcatagg 3428  T

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Target: scaffold0793 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0793
Description:

Target: scaffold0793; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 4869 - 4821
Alignment:
Q  20 tgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||| ||||| || |||||||||||||||| ||||||||||||||||||    
T  4869 tgtccgacacagggacacgcctaatccgaggagtgtccgtgcttcatag 4821  T

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Target: scaffold0652 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0652
Description:

Target: scaffold0652; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 451 - 403
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcata 67  Q
    ||||| |||||||| |||| ||||||||||| |||||||||||||||||    
T  451 gtgtccgacaccgggacacacctaatccgaggagtgtccgtgcttcata 403  T

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Target: scaffold0168 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 21115 - 21150
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    |||||||||||||||||||| |||||||||||||||    
T  21115 acacgcctaatccgagaagtatccgtgcttcatagg 21150  T

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Target: scaffold0168; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 34 - 69
Target Start/End: Original strand, 21373 - 21408
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||||||||||||||||||||| ||||||||||||    
T  21373 acacgcctaatccgagaagtgtctgtgcttcatagg 21408  T

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Target: scaffold0027 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 46742 - 46776
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    |||||||||||||||| ||||||||||||||||||    
T  46742 acacgcctaatccgaggagtgtccgtgcttcatag 46776  T

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Target: scaffold0019 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 69
Target Start/End: Original strand, 71806 - 71856
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatagg 69  Q
    ||||| |||||||| ||||| |||||||||| |||||| ||||||||||||    
T  71806 gtgtccgacaccgggacacgactaatccgaggagtgtcggtgcttcatagg 71856  T

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Target: scaffold0450 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 68
Target Start/End: Complemental strand, 8613 - 8564
Alignment:
Q  19 gtgtcggacaccggaacacgcctaatccgagaagtgtccgtgcttcatag 68  Q
    ||||| ||||| || ||||||||||| |||| ||||||||||||||||||    
T  8613 gtgtccgacactggtacacgcctaattcgaggagtgtccgtgcttcatag 8564  T

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Target: scaffold0136 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0136
Description:

Target: scaffold0136; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 70
Target Start/End: Complemental strand, 3812 - 3776
Alignment:
Q  34 acacgcctaatccgagaagtgtccgtgcttcataggg 70  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  3812 acacgcctaatccgaggagtgtccttgcttcataggg 3776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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