View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_174 (Length: 246)

Name: NF11069A_low_174
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_174
NF11069A_low_174
[»] chr6 (6 HSPs)
chr6 (128-212)||(14044769-14044853)
chr6 (119-198)||(14020524-14020607)
chr6 (24-79)||(14044861-14044916)
chr6 (53-112)||(14020649-14020708)
chr6 (124-154)||(13475564-13475594)
chr6 (183-212)||(14044691-14044720)
[»] chr8 (1 HSPs)
chr8 (124-176)||(10507760-10507812)


Alignment Details
Target: chr6 (Bit Score: 81; Significance: 3e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 14044853 - 14044769
Alignment:
Q  128 aaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta 212  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14044853 aaatgtatttgtctaacgaaatttcagcacatgactgctggaattaaaatgtatttatgttcacatttcaataaaaatttatcta 14044769  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 14020607 - 14020524
Alignment:
Q  119 gagctcaaaaaatgtatttgtctaacggaatttcagcacatgactgctgg----aattaaaatgtatttatgttcacatttcaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||| | |||    ||||||||||||||||||||||||||||||    
T  14020607 gagctcaaaaaatgtatttgtctaacggaatttcagcacatgaccggtggaattaattaaaatgtatttatgttcacatttcaa 14020524  T

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Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 14044916 - 14044861
Alignment:
Q  24 ccattgtctgccttttctccattcagttatgttccagctagttctccatcatccgt 79  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14044916 ccattgtctgccttttctccattcagttatgttccagctagttctccatcatccgt 14044861  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 53 - 112
Target Start/End: Complemental strand, 14020708 - 14020649
Alignment:
Q  53 tgttccagctagttctccatcatccgtgttctaaaagaacacttagttcagttgtcatat 112  Q
    |||||||||||||||||||||||||||   |||||||||||||||||||| || ||||||    
T  14020708 tgttccagctagttctccatcatccgtaacctaaaagaacacttagttcatttctcatat 14020649  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 154
Target Start/End: Original strand, 13475564 - 13475594
Alignment:
Q  124 caaaaaatgtatttgtctaacggaatttcag 154  Q
    |||||||||||||||||||||||||||||||    
T  13475564 caaaaaatgtatttgtctaacggaatttcag 13475594  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 212
Target Start/End: Complemental strand, 14044720 - 14044691
Alignment:
Q  183 tatgttcacatttcaataaaaatttatcta 212  Q
    ||||||||||||||||||||||||||||||    
T  14044720 tatgttcacatttcaataaaaatttatcta 14044691  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 176
Target Start/End: Original strand, 10507760 - 10507812
Alignment:
Q  124 caaaaaatgtatttgtctaacggaatttcagcacatgactgctggaattaaaa 176  Q
    ||||||||||||||||||| | ||||||||||||||||| | |||||||||||    
T  10507760 caaaaaatgtatttgtctatctgaatttcagcacatgacaggtggaattaaaa 10507812  T

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