View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_178 (Length: 246)
Name: NF11069A_low_178
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_178 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 46399971 - 46400197
Alignment:
| Q |
1 |
aaatcatgaaaaataagtgggaccatgccaaattcaaaaagatggaaaggaatgnnnnnnnncgcgggaacgtaaccgttttctatagcactcacttctt |
100 |
Q |
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| T |
46399971 |
aaatcatgaaaaataagtgggaccatgccaaattcaaaaagatggaaaggaatgaaaaaaaacgcgggaacgtaaccgttttctatagcactcacttctt |
46400070 |
T |
|
| Q |
101 |
tgctctaacgtcttagcgagtttctcatttcccgctctatataaacacacacgcattccttca---cttcaaatctcattcacaattcaaaatctctctc |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
46400071 |
tgctctaacgtcttagcgagtttctcatttcccgctctatataaacacacacgcattccttcacttcttcaaatctcattcacaattcaaaatctctctc |
46400170 |
T |
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| Q |
198 |
tctaaatttatctctgcattcaaactt |
224 |
Q |
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||||||||||||||||||||||||||| |
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| T |
46400171 |
tctaaatttatctctgcattcaaactt |
46400197 |
T |
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