View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_179 (Length: 246)
Name: NF11069A_low_179
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_179 |
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Alignment Details
Target: chr1 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 24 - 228
Target Start/End: Original strand, 36970898 - 36971102
Alignment:
| Q |
24 |
agatatcatccccattaacggtcttgcgattctccttgtgacacttgtcagatgcttcacctgtcacgaaacttatgaactctgtcgcacattcttgcat |
123 |
Q |
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| T |
36970898 |
agatatcgtccccattaacggtcttgcgattctccttgtgacacttgtcagatgcttcacctgtcacgaaacttatgaattctgtcgcacattcttgcat |
36970997 |
T |
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| Q |
124 |
caactgtttgctttcttttgagatctttgcattgggaggaagattttgcttcattattctacccacattcgctatgggcaacgttttatctccttcatcg |
223 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
36970998 |
caactgtttgctttcttttgagatctttgcattgggaggaagattttgcttcattattctacccacattcgctatgggcaacgttttatctccctcatcg |
36971097 |
T |
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| Q |
224 |
ttcat |
228 |
Q |
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||||| |
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| T |
36971098 |
ttcat |
36971102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 84
Target Start/End: Original strand, 39786325 - 39786381
Alignment:
| Q |
28 |
atcatccccattaacggtcttgcgattctccttgtgacacttgtcagatgcttcacc |
84 |
Q |
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|||||| ||||| || |||||||| |||||||||||||||||||||||||||||||| |
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| T |
39786325 |
atcatcaccattcactgtcttgcgcttctccttgtgacacttgtcagatgcttcacc |
39786381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 53 - 124
Target Start/End: Complemental strand, 56068049 - 56067978
Alignment:
| Q |
53 |
ttctccttgtgacacttgtcagatgcttcacctgtcacgaaacttatgaactctgtcgcacattcttgcatc |
124 |
Q |
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||||| || |||||||| ||||||||||||||||| | ||| ||||||||||||| |||| ||||||||| |
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| T |
56068049 |
ttctctttctgacacttttcagatgcttcacctgttatgaagcttatgaactctgatacacactcttgcatc |
56067978 |
T |
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