View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_182 (Length: 245)
Name: NF11069A_low_182
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_182 |
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Alignment Details
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 35742828 - 35742596
Alignment:
| Q |
1 |
agtacgaggatctcgaatatctcgtagatccagtaacatataaaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtctttt |
100 |
Q |
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| T |
35742828 |
agtacgaggatctcgaagatctcgaagatccagtaacttatagaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtctttt |
35742729 |
T |
|
| Q |
101 |
catatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgatttggtcagagaggaatattaaacatctcgagcttgtgaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
35742728 |
catatctaatgactacaaatttgagatcacaattgaacacctcgataagtggattccgattttgtcagagaggaatattaaacatctcgagcttgtgaac |
35742629 |
T |
|
| Q |
201 |
cacgaaacacatcccgatcaaatgctatatatt |
233 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
35742628 |
cacgaaacacatcccgatcaaatgctatatatt |
35742596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 231
Target Start/End: Complemental strand, 35749153 - 35748963
Alignment:
| Q |
41 |
taaaattatcacggatgttctcatgcagcaccaagggccgatagataagtttggtcttttcatatctaatgactacaaatttgagatcacaattgaacac |
140 |
Q |
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|||||| ||||| |||||||| ||||| ||| | || |||||| |||||||| |||||||||| || |||||||||| || |||||| ||||||| | |
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| T |
35749153 |
taaaatcatcacagatgttcttatgcaacacaacggtccgatacataagtttcatcttttcataccttatgactacaatttcaagatcataattgaattc |
35749054 |
T |
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| Q |
141 |
ctcgataagtggattccgatttggtcagagaggaatattaaacatctcgagcttgtgaaccacgaaacacatcccgatcaaatgctatata |
231 |
Q |
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||| || |||||||||| | | ||| |||| |||||||||||||||||||| ||||| ||| ||||||| ||||||||||| ||||| |
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| T |
35749053 |
ctcagtacgtggattccgttcttgtctaggagggatattaaacatctcgagcttttgaactacggaacacatgtcgatcaaatgccatata |
35748963 |
T |
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