View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_187 (Length: 244)

Name: NF11069A_low_187
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_187
NF11069A_low_187
[»] chr5 (5 HSPs)
chr5 (1-231)||(37704471-37704701)
chr5 (1-231)||(37698990-37699226)
chr5 (1-231)||(37437537-37437766)
chr5 (105-231)||(37698732-37698863)
chr5 (1-45)||(37698653-37698697)
[»] chr4 (1 HSPs)
chr4 (112-214)||(16841007-16841109)


Alignment Details
Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 37704471 - 37704701
Alignment:
Q  1 attagattgtttgcaaattgagtcgacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaat 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704471 attagattgtttgcaaattgagtctacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaat 37704570  T
Q  101 tcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37704571 tcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagaccagactttttgaacgtaattagcacgaaagttggaatcttat 37704670  T
Q  201 ttcaagttgtgataagataacaaattcattt 231  Q
    |||||||||||||||||||||||||||||||    
T  37704671 ttcaagttgtgataagataacaaattcattt 37704701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 37698990 - 37699226
Alignment:
Q  1 attagattgtttgcaaa--ttgagtcgacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatatta 98  Q
    |||||||||||| ||||  ||||||| | ||||||||||||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||    
T  37698990 attagattgtttacaaacattgagtctaggtattcccttattttgtgttgggggtgcttttcataaccgtatactgatatgacatttggcaacaatatta 37699089  T
Q  99 attcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatct 197  Q
    |||||||||| |||||||||||||||||||||||||||||||||||| ||||| ||| ||| |||||||| ||||||||||||||| |||||||||||||    
T  37699090 attcagtaacaatcatagaaaagtttggtgttcattaaactaaataacatcttggaaaaccaagacttttcgaacgtaattagcactaaagttggaatct 37699189  T
Q  198 tatttcaagttgtg---ataagataacaaattcattt 231  Q
    |||| |||||||||   ||||||||||||||||||||    
T  37699190 tattgcaagttgtgataataagataacaaattcattt 37699226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 37437537 - 37437766
Alignment:
Q  1 attagattgtttgcaaattgagtcgacgtattcccttattttgttttgggggtgcttttcataaacatatactgatatgacatttggcaacaatattaat 100  Q
    |||||||||||| |||||| |||| |  ||||||||| ||||  | ||||| |||||||||||| | |||| |||||||||| |||||||||||||||||    
T  37437537 attagattgtttacaaattcagtctagctattcccttgttttaatgtgggg-tgcttttcataaccgtatagtgatatgacaattggcaacaatattaat 37437635  T
Q  101 tcagtaaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatctta 199  Q
    ||| |||| |||||||||||||||||||||||||||||||||||| || || ||||||| |||||||| |||||||||||||    ||||||||||||||    
T  37437636 tcaataacaatcatagaaaagtttggtgttcattaaactaaataacatattggaagaccaagacttttcgaacgtaattagc----aagttggaatctta 37437731  T
Q  200 tttcaagttgtg---ataagataacaaattcattt 231  Q
    || |||||||||   ||||||||||||||||||||    
T  37437732 ttgcaagttgtgataataagataacaaattcattt 37437766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 37698732 - 37698863
Alignment:
Q  105 taaccatcatagaaaagtttggtgttcattaaactaaataatatcttcgaagacca-gactttttgaacgtaatta----gcacgaaagttggaatctta 199  Q
    |||| |||||| ||||||||||||||| ||||||||||||| ||||| |||||||| |||||||| ||||||||||    |||| |||||||||||||||    
T  37698732 taacaatcatacaaaagtttggtgttcgttaaactaaataacatcttggaagaccaagacttttttaacgtaattaattagcactaaagttggaatctta 37698831  T
Q  200 tttcaagttgtgataagataacaaattcattt 231  Q
    || |||||||||||||||||||||||||||||    
T  37698832 ttgcaagttgtgataagataacaaattcattt 37698863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 37698653 - 37698697
Alignment:
Q  1 attagattgtttgcaaattgagtcgacgtattcccttattttgtt 45  Q
    |||||||||||| ||||||||||| | ||||||||||||||||||    
T  37698653 attagattgtttacaaattgagtctaagtattcccttattttgtt 37698697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 214
Target Start/End: Complemental strand, 16841109 - 16841007
Alignment:
Q  112 catagaaaagtttggtgttcattaaactaaataatatcttcgaagacc-agactttttgaacgtaattagcacgaaagttggaatcttatttcaagttgt 210  Q
    |||| |||||||||||||| | |||||||||||| ||||| ||||||| ||||||||||||||||||||||||  |||||||||||||||| ||||||||    
T  16841109 catacaaaagtttggtgtttaataaactaaataaaatcttggaagaccaagactttttgaacgtaattagcac-taagttggaatcttattgcaagttgt 16841011  T
Q  211 gata 214  Q
    ||||    
T  16841010 gata 16841007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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