View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_19 (Length: 436)
Name: NF11069A_low_19
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_19 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 7 - 429
Target Start/End: Complemental strand, 40821938 - 40821517
Alignment:
| Q |
7 |
aagaatattttgaataaagaaatgcttcttgtagatctgagaggatacatacttgatttcatgaaataaaaatgacggtctaggnnnnnnnnnnnnnnnn |
106 |
Q |
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| T |
40821938 |
aagaaaattttgaataaagaaatgattcttgtagatctgagaggatacatacttgatttcatgaaataaaaatgacggtctagggaaaaaaaagaaaaga |
40821839 |
T |
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| Q |
107 |
nnnnntgataatctaattaagtagtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttag |
206 |
Q |
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| T |
40821838 |
aaag-tgataacctaaataagtagtgaaatgactcaaacaacattaagttcttaaaatgatagagattttcagaaccatgatttacttgtgattttttag |
40821740 |
T |
|
| Q |
207 |
actcttgactttaaggaaatctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtc |
306 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40821739 |
actcttgactttaaggaaatctcaaatcattattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtc |
40821640 |
T |
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| Q |
307 |
gttgttcaaatatgctctctgttctgttcattttgttttgctatttgttacaagttagtattaccataaccaacatcacatcatcccaatacataaagga |
406 |
Q |
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| T |
40821639 |
gttgttcaaatatgctctctgttctgttcattttgttttgcactttgttacaagttagtattgccataaccaacatcacatcatcccagtacataaagga |
40821540 |
T |
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| Q |
407 |
caccgaaactcttatctccaaag |
429 |
Q |
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| T |
40821539 |
cactgaaactcttatctccaaag |
40821517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 129 - 429
Target Start/End: Original strand, 20292021 - 20292311
Alignment:
| Q |
129 |
agtgaaatgactcaaacaacgttaagtttttaaaatgatagagattttaagaaccatgatttacttgtgattttttagactcttgactttaag---gaaa |
225 |
Q |
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||||||||| |||||| ||| |||| ||||| |||| ||| |||| ||||| |||||||| |||||||||||||||||||||| ||||| |||| |
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| T |
20292021 |
agtgaaatgtctcaaagaacattaattttttgaaataata----tttttagaactttgatttacctgtgattttttagactcttgacgttaagaaggaaa |
20292116 |
T |
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| Q |
226 |
tctcaaatcatcattaataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaatatgctctc |
325 |
Q |
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| T |
20292117 |
tctcaaatcattattaataagaaagagtggtt-tttttgtatcatagtctacttgttgatcatataatgggt--ttcagt------tcaaatatgctctc |
20292207 |
T |
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| Q |
326 |
tgttctgttcattttgttttgctatttgttacaagttagtattaccataaccaacatcacatcatcccaatacataaaggacaccgaaactcttatctcc |
425 |
Q |
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| T |
20292208 |
tgttctgttcattttgttttgctatttgttacaagttaatattgccataaacaccatcacatcatcccaattcatcaaggacgctgaaactcttatctcc |
20292307 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 316
Target Start/End: Complemental strand, 20092660 - 20092587
Alignment:
| Q |
241 |
aataagaaagagtggttgtttttgtatcatagtctaattgttgatcatataatgggtgtttcagtcgttgttcaaa |
316 |
Q |
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| T |
20092660 |
aataagaaagagtggttgtttatgtatcatacttttagtattgatcacataat--gtgtttcaggtgttgttcaaa |
20092587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 352
Target Start/End: Complemental strand, 135603 - 135558
Alignment:
| Q |
307 |
gttgttcaaatatgctctctgttctgttcattttgttttgctattt |
352 |
Q |
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| T |
135603 |
gttgttcaaatgtgttctctgttttgttaattttgttttgctattt |
135558 |
T |
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