View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11069A_low_190 (Length: 243)
Name: NF11069A_low_190
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11069A_low_190 |
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Alignment Details
Target: chr6 (Bit Score: 121; Significance: 4e-62; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 26 - 150
Target Start/End: Complemental strand, 14044617 - 14044493
Alignment:
| Q |
26 |
ctctgtttagaaagaatggcaataatatctttagggagggagttagtacttggcattttttcacactctgttagtagaagattaggaactcattcattgc |
125 |
Q |
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| T |
14044617 |
ctctgtttagaaagaatggcaataatatctttagggagggagttagtactttgcattttttcacactctgttagtagaagattaggaactcattcattgc |
14044518 |
T |
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| Q |
126 |
agatttcatggaaaaatatatcata |
150 |
Q |
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| T |
14044517 |
agatttcatggaaaaatatatcata |
14044493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 152 - 243
Target Start/End: Complemental strand, 14044329 - 14044238
Alignment:
| Q |
152 |
tgtagtttgtgacagactgtcttgttatccaccgctatgtgacgaactatttgcggtggcgccgtagcctccgtctgtttcatatcagtcga |
243 |
Q |
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| T |
14044329 |
tgtagtttgtgacagactgtcttgttatccacatctatgtgacgaactatttgcggtggcgccgtagcctccgtctgtttcgtatctgtcga |
14044238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 154 - 243
Target Start/End: Complemental strand, 13930147 - 13930059
Alignment:
| Q |
154 |
tagtttgtgacagactgtcttgttatccaccgctatgtgacgaactatttgcggtggcgccgtagcctccgtctgtttcatatcagtcga |
243 |
Q |
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| T |
13930147 |
tagtttgtgacagactgtcttattatccaccgctatgtgacgaactatttg-tgtggcgccgccgcctccgtctgtttcgtatctgtcga |
13930059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 13930405 - 13930348
Alignment:
| Q |
73 |
acttggcattttttcacactctgttagtagaagattaggaactcattcattgcagatt |
130 |
Q |
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| T |
13930405 |
actttgcattttttcactctctgttagtggaagattaagagctcattcattgcagatt |
13930348 |
T |
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