View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11069A_low_196 (Length: 242)

Name: NF11069A_low_196
Description: NF11069A
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11069A_low_196
NF11069A_low_196
[»] chr3 (1 HSPs)
chr3 (79-199)||(34948721-34948844)
[»] chr4 (2 HSPs)
chr4 (20-75)||(37029534-37029589)
chr4 (79-164)||(48292031-48292117)
[»] chr8 (3 HSPs)
chr8 (131-176)||(5726462-5726507)
chr8 (92-168)||(11630665-11630741)
chr8 (79-116)||(5726424-5726461)
[»] chr7 (3 HSPs)
chr7 (79-115)||(16650621-16650657)
chr7 (79-115)||(17624981-17625017)
chr7 (79-164)||(40066729-40066808)
[»] chr2 (1 HSPs)
chr2 (96-168)||(10376365-10376437)
[»] chr1 (1 HSPs)
chr1 (74-115)||(38114049-38114090)
[»] chr6 (1 HSPs)
chr6 (92-182)||(12798612-12798701)


Alignment Details
Target: chr3 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 79 - 199
Target Start/End: Original strand, 34948721 - 34948844
Alignment:
Q  79 taaagattgatgaacacccttttaattcatccaccccatacaccactgccacgtgacaatttattttgtcttcttcaaccaaaataata---tataaaat 175  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||   ||||||||    
T  34948721 taaagattgatgaacacccttttaattcattcaccctatacaccactgccatgtggcaatttattttgtcttcttcaaccaaaataatatagtataaaat 34948820  T
Q  176 ataacctttacattcttttgttcc 199  Q
    ||||| ||| ||||||||||||||    
T  34948821 ataacatttccattcttttgttcc 34948844  T

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Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 37029534 - 37029589
Alignment:
Q  20 cattgaagttactccaaatcgacacgatggacaacatgatattgtggtatcaaatt 75  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  37029534 cattgaagttactccaaatagacacgatggacaacatgatattgtggtatgaaatt 37029589  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 48292117 - 48292031
Alignment:
Q  79 taaagattgatgaacacccttttaattcatccaccccatacaccactgccacgtgaca---atttattttgtcttcttcaaccaaaata 164  Q
    ||||||||||||||||||||||||||||||||| ||| |  |||||||| ||||| ||    ||| |||||||||||||||||||||||    
T  48292117 taaagattgatgaacacccttttaattcatccatcccgt--accactgctacgtggcagtttttttttttgtcttcttcaaccaaaata 48292031  T

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Target: chr8 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 131 - 176
Target Start/End: Original strand, 5726462 - 5726507
Alignment:
Q  131 gtgacaatttattttgtcttcttcaaccaaaataatatataaaata 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  5726462 gtgacaatttattttgtcttcttcaaccaaaataatatataaaata 5726507  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 92 - 168
Target Start/End: Complemental strand, 11630741 - 11630665
Alignment:
Q  92 acacccttttaattcatccaccccatacaccactgccac-gtgacaatttattttgtcttcttcaaccaaaataatat 168  Q
    ||||||||||||| |||||||||| ||||||||| |||| ||| |||||| ||||||||| ||||| |||||||||||    
T  11630741 acacccttttaatccatccaccccttacaccact-ccactgtggcaattttttttgtcttattcaaacaaaataatat 11630665  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 5726424 - 5726461
Alignment:
Q  79 taaagattgatgaacacccttttaattcatccacccca 116  Q
    |||||||||||||||||||||||||||||  |||||||    
T  5726424 taaagattgatgaacacccttttaattcaatcacccca 5726461  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 16650657 - 16650621
Alignment:
Q  79 taaagattgatgaacacccttttaattcatccacccc 115  Q
    |||||||||||||||||||||||||||||||||||||    
T  16650657 taaagattgatgaacacccttttaattcatccacccc 16650621  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 79 - 115
Target Start/End: Complemental strand, 17625017 - 17624981
Alignment:
Q  79 taaagattgatgaacacccttttaattcatccacccc 115  Q
    |||||||||||||||||||||||||||||||||||||    
T  17625017 taaagattgatgaacacccttttaattcatccacccc 17624981  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 79 - 164
Target Start/End: Complemental strand, 40066808 - 40066729
Alignment:
Q  79 taaagattgatgaacacccttttaattcatccaccccatacaccactgccacgtgacaatttattttgtcttcttcaaccaaaata 164  Q
    |||||||||||||||| ||||||||||||||||| ||||  |||||||| ||||| || ||| |||    ||||||||||||||||    
T  40066808 taaagattgatgaacaaccttttaattcatccactccat--accactgctacgtggcatttttttt----ttcttcaaccaaaata 40066729  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 168
Target Start/End: Complemental strand, 10376437 - 10376365
Alignment:
Q  96 ccttttaattcatccaccccatacaccactgccac-gtgacaatttattttgtcttcttcaaccaaaataatat 168  Q
    ||||||||| |||||||||| ||||||||| |||| ||| |||||| ||||||||| ||||| |||||||||||    
T  10376437 ccttttaatccatccaccccttacaccact-ccactgtggcaattttttttgtcttattcaaacaaaataatat 10376365  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 38114090 - 38114049
Alignment:
Q  74 ttggataaagattgatgaacacccttttaattcatccacccc 115  Q
    |||| |||| ||||||||||||||||||||||||||||||||    
T  38114090 ttgggtaaaaattgatgaacacccttttaattcatccacccc 38114049  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 92 - 182
Target Start/End: Complemental strand, 12798701 - 12798612
Alignment:
Q  92 acacccttttaattcatccaccccatacaccactgccac-gtgacaa-tttattttgtcttcttcaaccaaaataatatataaaatataacct 182  Q
    ||||||||||||| |||||| ||| ||||||||| ||||  |||||| ||| ||||||||| ||||| |||||||  ||||||||||||||||    
T  12798701 acacccttttaatccatccatcccttacaccact-ccactatgacaatttttttttgtcttattcaaacaaaata--atataaaatataacct 12798612  T

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